Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_T7_M03
(781 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0610 - 25449085-25453284 36 0.027
03_01_0515 - 3864796-3865425 30 1.8
01_02_0007 + 10132380-10133201 30 1.8
12_02_1174 - 26696869-26698191 29 4.1
06_01_0486 - 3455030-3455770 29 4.1
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 29 5.5
07_01_0577 - 4286048-4286186,4286600-4286660,4286957-4287089,428... 29 5.5
09_02_0543 + 10427321-10428315,10428440-10429154 28 7.2
07_03_1710 - 28903614-28903673,28904982-28905146,28905453-289056... 28 7.2
04_03_0747 - 19251617-19251781,19252377-19252502,19252606-192527... 28 7.2
10_08_0970 + 21944930-21945061,21945532-21945650,21945758-219458... 28 9.6
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 28 9.6
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 36.3 bits (80), Expect = 0.027
Identities = 30/123 (24%), Positives = 37/123 (30%), Gaps = 1/123 (0%)
Frame = +2
Query: 398 TPAPXXAXXXXRXAPPPLXXRLXXAFXPXIXXXXPXTXXXGXPXXPAXXXXXXXXXXXXP 577
TP + + PP L P P T P P P
Sbjct: 1099 TPEESSPPSVPKASSPPTEKSLPP---PATVSLPPPTVKPLPPPVPVSSPPPPEKSPPPP 1155
Query: 578 XXTXVPXRXXVSPXPXSXPMXSPXPP-QXTPPXXPXLXXXXXXSSPXXXRPXXSXSPPXH 754
+P SP P + P+ SP PP + PP P + SP P S PP
Sbjct: 1156 APVILPPPPIKSPPPPA-PVISPPPPVKSPPPPAPVILPPPPVKSPPPPAPVISPPPPVK 1214
Query: 755 XXP 763
P
Sbjct: 1215 SPP 1217
Score = 34.3 bits (75), Expect = 0.11
Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
Frame = +2
Query: 575 PXXTXVPXRXXVSPXPXSXPMXSPXPP-QXTPPXXPXLXXXXXXSSPXXXRPXXSXSPPX 751
P +P SP P + P+ SP PP + PP P + SP P S PP
Sbjct: 1187 PAPVILPPPPVKSPPPPA-PVISPPPPVKSPPPPAPVILPPPPVKSPPPPAPVISPPPPE 1245
Query: 752 HXXP 763
P
Sbjct: 1246 KSPP 1249
Score = 30.3 bits (65), Expect = 1.8
Identities = 24/108 (22%), Positives = 28/108 (25%)
Frame = +2
Query: 440 PPPLXXRLXXAFXPXIXXXXPXTXXXGXPXXPAXXXXXXXXXXXXPXXTXVPXRXXVSPX 619
PPP L P P P P P P SP
Sbjct: 1129 PPPTVKPLPP---PVPVSSPPPPEKSPPPPAPVILPPPPIKSPPPPAPVISPPPPVKSPP 1185
Query: 620 PXSXPMXSPXPPQXTPPXXPXLXXXXXXSSPXXXRPXXSXSPPXHXXP 763
P + + P P + PP P + SP P PP P
Sbjct: 1186 PPAPVILPPPPVKSPPPPAPVISPPPPVKSPPPPAPVILPPPPVKSPP 1233
Score = 28.7 bits (61), Expect = 5.5
Identities = 17/54 (31%), Positives = 22/54 (40%)
Frame = +2
Query: 593 PXRXXVSPXPXSXPMXSPXPPQXTPPXXPXLXXXXXXSSPXXXRPXXSXSPPXH 754
P SP P + + SP PP+ +PP P +P P SPP H
Sbjct: 851 PPEKSSSPPPEAH-VSSPPPPEKSPP--PPETKSPPTLTPEISPPPEGKSPPSH 901
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/59 (28%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
Frame = +2
Query: 593 PXRXXVSPXPXSXPMXSPXPPQXTPP--XXPXLXXXXXXSSPXXXRPXXSXSPPXHXXP 763
P SP P + +P PP+ TPP P S P + SPP P
Sbjct: 621 PESKASSPPPPAPEGHTPSPPESTPPSEKSPPTPESKASSPPPPTPEGHTPSPPKSTPP 679
Score = 27.9 bits (59), Expect = 9.6
Identities = 18/64 (28%), Positives = 23/64 (35%), Gaps = 1/64 (1%)
Frame = +2
Query: 575 PXXTXVPXRXXVSPXPXSXPMXSPXPP-QXTPPXXPXLXXXXXXSSPXXXRPXXSXSPPX 751
P +P SP P + P+ SP PP + PP P + S P PP
Sbjct: 1219 PAPVILPPPPVKSPPPPA-PVISPPPPEKSPPPAAPVILSPPAVKSLPPPAPVSLPPPPV 1277
Query: 752 HXXP 763
P
Sbjct: 1278 KSLP 1281
>03_01_0515 - 3864796-3865425
Length = 209
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/45 (33%), Positives = 15/45 (33%)
Frame = +2
Query: 614 PXPXSXPMXSPXPPQXTPPXXPXLXXXXXXSSPXXXRPXXSXSPP 748
P P S P PP PP P SP P S PP
Sbjct: 74 PPPPSVTSSPPPPPLPPPPPPPAASPPPPPPSPPPPSPVKSSPPP 118
>01_02_0007 + 10132380-10133201
Length = 273
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/51 (33%), Positives = 17/51 (33%), Gaps = 1/51 (1%)
Frame = +3
Query: 615 PXPXPAPWXLXXPXSXPLXXP-XXXXPXVXXLHXPXPGPXPXXXPXXTKXP 764
P P P P L P PL P P L P P P P P P
Sbjct: 88 PQPQPQPQPLPLPGPQPLPQPGPQPNPNPQPLPQPNPNPQPLPQPDPNAPP 138
>12_02_1174 - 26696869-26698191
Length = 440
Score = 29.1 bits (62), Expect = 4.1
Identities = 18/64 (28%), Positives = 19/64 (29%)
Frame = +3
Query: 573 PXXXQXXXXXSXXPPXPXPAPWXLXXPXSXPLXXPXXXXPXVXXLHXPXPGPXPXXXPXX 752
P Q PP P P P P+ P P L P P P P P
Sbjct: 143 PVKPQPPPSLPPPPPPPPPPPPPRPPSVKPPVVQPKPQPP--PSLQPPSPPPPPPTRPPS 200
Query: 753 TKXP 764
K P
Sbjct: 201 VKPP 204
>06_01_0486 - 3455030-3455770
Length = 246
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/63 (26%), Positives = 19/63 (30%)
Frame = +2
Query: 575 PXXTXVPXRXXVSPXPXSXPMXSPXPPQXTPPXXPXLXXXXXXSSPXXXRPXXSXSPPXH 754
P VP P P PP PP P + S P P SPP +
Sbjct: 88 PTPPYVPSPPPYVPPYIPPPTPPYVPPYIPPPTPPYVPPPTPPSPPPYVPPPTPPSPPPY 147
Query: 755 XXP 763
P
Sbjct: 148 VPP 150
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = +2
Query: 575 PXXTXVPXRXXVSPXPXSXPMXSPXPPQXTPPXXP 679
P VP SP P P P PP PP P
Sbjct: 119 PTPPYVPPPTPPSPPPYVPPPTPPSPPPYVPPPSP 153
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/51 (27%), Positives = 18/51 (35%)
Frame = +2
Query: 611 SPXPXSXPMXSPXPPQXTPPXXPXLXXXXXXSSPXXXRPXXSXSPPXHXXP 763
+P P P P P +PP P L ++P P PP P
Sbjct: 1136 APPPPPLPEGPPPLPSDSPPCQPPLPPSPPPATPPPPPPLSPSLPPPPPPP 1186
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = +2
Query: 593 PXRXXVSPXPXSXPMXSPXPPQXTPPXXP 679
P + P P P+ S PPQ PP P
Sbjct: 1174 PLSPSLPPPPPPPPLPSGPPPQPAPPPLP 1202
>07_01_0577 -
4286048-4286186,4286600-4286660,4286957-4287089,
4287286-4287350,4288346-4288451,4288529-4288750,
4289619-4289852,4289948-4290037,4290605-4291507
Length = 650
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/55 (27%), Positives = 18/55 (32%)
Frame = +2
Query: 599 RXXVSPXPXSXPMXSPXPPQXTPPXXPXLXXXXXXSSPXXXRPXXSXSPPXHXXP 763
R +P P P PP TP P L + P +P S P P
Sbjct: 42 RRLFTPAPRHAATPPPPPPPPTPAVEPTLPIPPASTPPTPPQPSASTEPSTAPPP 96
>09_02_0543 + 10427321-10428315,10428440-10429154
Length = 569
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/57 (31%), Positives = 18/57 (31%), Gaps = 3/57 (5%)
Frame = +3
Query: 603 SXXPPXPXPAPWXL---XXPXSXPLXXPXXXXPXVXXLHXPXPGPXPXXXPXXTKXP 764
S PP P PAP P S P P P P P P P T P
Sbjct: 12 SPAPPRPTPAPQATPPPAIPESGPPPPPAPDMPPPPPTPAPQSSPAPPPAPDMTPPP 68
>07_03_1710 -
28903614-28903673,28904982-28905146,28905453-28905638,
28905784-28905927,28906281-28906460,28906559-28907215
Length = 463
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +2
Query: 584 TXVPXRXXVSPXPXSXPMXSPXPPQXTPPXXP 679
T P + +P P S P +P PPQ PP P
Sbjct: 54 TAPPPKPSPTPPPASPP-PAPTPPQTRPPSPP 84
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/44 (31%), Positives = 16/44 (36%)
Frame = +2
Query: 632 PMXSPXPPQXTPPXXPXLXXXXXXSSPXXXRPXXSXSPPXHXXP 763
P SP PP +PP P S P + SPP P
Sbjct: 58 PKPSPTPPPASPPPAPTPPQTRPPSPPPQQQQPRPVSPPPVAEP 101
>04_03_0747 -
19251617-19251781,19252377-19252502,19252606-19252716,
19252931-19253679,19254034-19254167,19254595-19254740,
19255166-19255336,19255977-19256828
Length = 817
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/45 (31%), Positives = 14/45 (31%)
Frame = +3
Query: 612 PPXPXPAPWXLXXPXSXPLXXPXXXXPXVXXLHXPXPGPXPXXXP 746
PP P P P P P P P V P P P P
Sbjct: 128 PPPPPPPPARTPMPTPTPTPTPTPTRPPVPVWAAPLPARTPTPTP 172
>10_08_0970 +
21944930-21945061,21945532-21945650,21945758-21945818,
21946241-21946288,21946610-21946726,21947434-21949044
Length = 695
Score = 27.9 bits (59), Expect = 9.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2
Query: 614 PXPXSXPMXSPXPPQXTPP 670
P P S P+ SP PP +PP
Sbjct: 164 PRPMSLPVGSPPPPPTSPP 182
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 27.9 bits (59), Expect = 9.6
Identities = 16/51 (31%), Positives = 16/51 (31%)
Frame = +3
Query: 612 PPXPXPAPWXLXXPXSXPLXXPXXXXPXVXXLHXPXPGPXPXXXPXXTKXP 764
PP P P P L P P P L P P P P P P
Sbjct: 602 PPPPPPPPPILPNRSVPPPPPPPPPLPNHSVLPPPPPPPPPPSLPNRLVPP 652
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,754,320
Number of Sequences: 37544
Number of extensions: 165505
Number of successful extensions: 1036
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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