Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_T7_L23
(925 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ... 34 0.17
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 33 0.22
AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical... 32 0.67
Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical pr... 31 1.5
Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical pr... 30 2.0
U28942-1|AAA68355.2| 441|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z69360-4|CAC42291.2| 732|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z69360-3|CAA93286.2| 369|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z69360-2|CAA93285.2| 780|Caenorhabditis elegans Hypothetical pr... 29 4.7
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 28 8.2
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 28 8.2
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 28 8.2
>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
protein Y53C10A.10 protein.
Length = 1582
Score = 33.9 bits (74), Expect = 0.17
Identities = 20/51 (39%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Frame = +1
Query: 580 PDPXXX-NPXPGPXPPCXRGXXXSXXPFXK-ISPX-PXXPQXPHXPXPSXP 723
P+P NP PGP PP G P SP P P P+ P PS P
Sbjct: 932 PNPIPKPNPGPGPGPPSPNGPSDPNKPSPNGPSPNGPNGPSDPNKPGPSGP 982
Score = 33.1 bits (72), Expect = 0.29
Identities = 19/63 (30%), Positives = 20/63 (31%), Gaps = 2/63 (3%)
Frame = +1
Query: 547 PEXXXPGKXQTPDPXXXNPXP--GPXPPCXRGXXXSXXPFXKISPXPXXPQXPHXPXPSX 720
P P P P +P GP P G P P P P P P PS
Sbjct: 947 PSPNGPSDPNKPSPNGPSPNGPNGPSDPNKPGPSGPNGPSDPNKPSPNGPSDPVKPSPSG 1006
Query: 721 PRP 729
P P
Sbjct: 1007 PSP 1009
Score = 30.7 bits (66), Expect = 1.5
Identities = 21/87 (24%), Positives = 25/87 (28%)
Frame = +1
Query: 547 PEXXXPGKXQTPDPXXXNPXPGPXPPCXRGXXXSXXPFXKISPXPXXPQXPHXPXPSXPR 726
P P + P+ N GP P G P P P P P P+ P
Sbjct: 1210 PGPNGPNEPSDPNKPGPNGSNGPSDPNKPGPNGPNGPSDPNKPGPNGPNEP--SDPNRPG 1267
Query: 727 PXPXXGXLXXAXXNPKNXXXXXXPXQP 807
P G L P P +P
Sbjct: 1268 PNGPNGPLDPNKPGPNGPNGPSDPNKP 1294
Score = 28.3 bits (60), Expect = 8.2
Identities = 20/87 (22%), Positives = 24/87 (27%)
Frame = +1
Query: 547 PEXXXPGKXQTPDPXXXNPXPGPXPPCXRGXXXSXXPFXKISPXPXXPQXPHXPXPSXPR 726
P P + P+ N GP P G P P P P P P+ P
Sbjct: 1098 PGPNGPNEPSDPNKPGPNGPNGPSDPNKPGPNGPNEPSDPNKPGPNGPNGP--SDPNKPG 1155
Query: 727 PXPXXGXLXXAXXNPKNXXXXXXPXQP 807
P G P P +P
Sbjct: 1156 PNGPNGPSDPNKPGPNGPNESSDPNKP 1182
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 33.5 bits (73), Expect = 0.22
Identities = 23/89 (25%), Positives = 30/89 (33%), Gaps = 5/89 (5%)
Frame = +1
Query: 562 PGKXQTPDPXXXNPXPGPXP-PCXRGXXXSXXPFXKISPXPXXPQXPHXPXPSX----PR 726
P P P P P P P P + + P+ + P P P PH P P P
Sbjct: 95 PAPPPAPYPQHAVPAPAPPPAPYPQHAVPAPAPYQQQPPPPPPP--PHYPPPPPHYPPPP 152
Query: 727 PXPXXGXLXXAXXNPKNXXXXXXPXQPXH 813
P P + + P P QP +
Sbjct: 153 PAPHSAYIDHSAPRPAYIEHSAPPPQPQY 181
>AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical
protein Y43F8C.20 protein.
Length = 193
Score = 31.9 bits (69), Expect = 0.67
Identities = 20/63 (31%), Positives = 21/63 (33%)
Frame = -3
Query: 734 GXGRGXXGXGXWGXWGXLGXGEIFXKGXXEXXXPRXXGGXGPGXGFXXXGSGVWXXPGXX 555
G GRG G G WG G G G + GG G G G G PG
Sbjct: 93 GGGRGGGGRGDWGGNNNGGGGNWGGGGNNDGGWGGNNGGGGGGRGGGGRGGDGRGPPGSN 152
Query: 554 XSG 546
G
Sbjct: 153 GGG 155
>Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical
protein T28C6.1 protein.
Length = 281
Score = 30.7 bits (66), Expect = 1.5
Identities = 20/67 (29%), Positives = 23/67 (34%)
Frame = -3
Query: 734 GXGRGXXGXGXWGXWGXLGXGEIFXKGXXEXXXPRXXGGXGPGXGFXXXGSGVWXXPGXX 555
G GRG G G WG G + +G + G G G G G G W G
Sbjct: 197 GGGRGGNQGGEQGGWGGQGGSQGGSQGGSQGGWGNQGGQQGGGRG-GQQGPGGWGG-GGR 254
Query: 554 XSGXAXW 534
G W
Sbjct: 255 GGGWGGW 261
>Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical
protein F45B8.3 protein.
Length = 241
Score = 30.3 bits (65), Expect = 2.0
Identities = 16/45 (35%), Positives = 16/45 (35%)
Frame = +1
Query: 601 PXPGPXPPCXRGXXXSXXPFXKISPXPXXPQXPHXPXPSXPRPXP 735
P P P PP S P P P P P P P P P P
Sbjct: 88 PLPPPPPPASPCCGPSPVP-APCCPPPPAPAAPCCPPPPPPTPSP 131
>U28942-1|AAA68355.2| 441|Caenorhabditis elegans Hypothetical
protein F56D3.1 protein.
Length = 441
Score = 30.3 bits (65), Expect = 2.0
Identities = 19/58 (32%), Positives = 19/58 (32%)
Frame = +1
Query: 562 PGKXQTPDPXXXNPXPGPXPPCXRGXXXSXXPFXKISPXPXXPQXPHXPXPSXPRPXP 735
P T P P PP PF I P PQ P P P PRP P
Sbjct: 160 PQTVATIAPSFVRPQVPTAPPRVIAPQQPQQPFRPIQPIQ--PQQPFQPRPFQPRPQP 215
>Z69360-4|CAC42291.2| 732|Caenorhabditis elegans Hypothetical
protein F25H8.5c protein.
Length = 732
Score = 29.1 bits (62), Expect = 4.7
Identities = 17/53 (32%), Positives = 19/53 (35%), Gaps = 3/53 (5%)
Frame = +1
Query: 580 PDPXXXN--PXPGPXPPCXRGXXXSXXPFXKISPXPXXPQ-XPHXPXPSXPRP 729
P P N P PGP PPC + P + P PQ P P P
Sbjct: 94 PPPPRNNCLPPPGPPPPCQQYQQPQPPPCQRPQPPQPQPQPYPQRTGGCLPSP 146
>Z69360-3|CAA93286.2| 369|Caenorhabditis elegans Hypothetical
protein F25H8.5b protein.
Length = 369
Score = 29.1 bits (62), Expect = 4.7
Identities = 17/53 (32%), Positives = 19/53 (35%), Gaps = 3/53 (5%)
Frame = +1
Query: 580 PDPXXXN--PXPGPXPPCXRGXXXSXXPFXKISPXPXXPQ-XPHXPXPSXPRP 729
P P N P PGP PPC + P + P PQ P P P
Sbjct: 94 PPPPRNNCLPPPGPPPPCQQYQQPQPPPCQRPQPPQPQPQPYPQRTGGCLPSP 146
>Z69360-2|CAA93285.2| 780|Caenorhabditis elegans Hypothetical
protein F25H8.5a protein.
Length = 780
Score = 29.1 bits (62), Expect = 4.7
Identities = 17/53 (32%), Positives = 19/53 (35%), Gaps = 3/53 (5%)
Frame = +1
Query: 580 PDPXXXN--PXPGPXPPCXRGXXXSXXPFXKISPXPXXPQ-XPHXPXPSXPRP 729
P P N P PGP PPC + P + P PQ P P P
Sbjct: 94 PPPPRNNCLPPPGPPPPCQQYQQPQPPPCQRPQPPQPQPQPYPQRTGGCLPSP 146
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.3 bits (60), Expect = 8.2
Identities = 19/61 (31%), Positives = 19/61 (31%), Gaps = 1/61 (1%)
Frame = +1
Query: 565 GKXQTPDPXXXNPXPGPX-PPCXRGXXXSXXPFXKISPXPXXPQXPHXPXPSXPRPXPXX 741
GK Q P P P P P G P SP P P P P P P
Sbjct: 227 GKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAG 286
Query: 742 G 744
G
Sbjct: 287 G 287
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.3 bits (60), Expect = 8.2
Identities = 19/61 (31%), Positives = 19/61 (31%), Gaps = 1/61 (1%)
Frame = +1
Query: 565 GKXQTPDPXXXNPXPGPX-PPCXRGXXXSXXPFXKISPXPXXPQXPHXPXPSXPRPXPXX 741
GK Q P P P P P G P SP P P P P P P
Sbjct: 248 GKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAG 307
Query: 742 G 744
G
Sbjct: 308 G 308
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.3 bits (60), Expect = 8.2
Identities = 19/61 (31%), Positives = 19/61 (31%), Gaps = 1/61 (1%)
Frame = +1
Query: 565 GKXQTPDPXXXNPXPGPX-PPCXRGXXXSXXPFXKISPXPXXPQXPHXPXPSXPRPXPXX 741
GK Q P P P P P G P SP P P P P P P
Sbjct: 233 GKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAG 292
Query: 742 G 744
G
Sbjct: 293 G 293
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,021,754
Number of Sequences: 27780
Number of extensions: 170692
Number of successful extensions: 588
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2370744068
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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