Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_T7_L15
(780 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos... 32 0.080
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M... 30 0.32
SPBC14C8.15 |||triglyceride lipase-cholesterol esterase |Schizos... 30 0.43
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|... 27 3.0
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ... 27 3.0
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos... 27 3.0
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L... 27 3.0
SPCC1827.02c |||cholinephosphate cytidylyltransferase |Schizosac... 26 5.3
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S... 26 7.0
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po... 25 9.2
>SPBC215.03c |csn1||COP9/signalosome complex subunit
Csn1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 422
Score = 32.3 bits (70), Expect = 0.080
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 309 DMVSKIYAFCGLKFSCLKGFASGVTLIFPVASDTSERI 422
++ S IYA+CGL CL + + V +DTS+ I
Sbjct: 184 ELTSPIYAYCGLANFCLGDYEEALAHFLKVETDTSDGI 221
>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 556
Score = 30.3 bits (65), Expect = 0.32
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = -3
Query: 538 DVDVQKFFTALGSGVKDLVPDESTGGDDQEFERNEASNVILSEVSDA 398
D ++ F T G KD VP + GD+ E EASN I S D+
Sbjct: 58 DAELFMFDTGSADGAKDSVPLDIIAGDNTVKEDEEASNEIPSIWEDS 104
>SPBC14C8.15 |||triglyceride lipase-cholesterol esterase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 29.9 bits (64), Expect = 0.43
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Frame = -3
Query: 340 PQNAYILDTISGNIYVWIGKQSTANEKSQAMTKAQELLNAKNYPSWVQVTR--VLQNTEP 167
P A I+D W GK + +K A + + K + W Q+TR VLQ +
Sbjct: 288 PVFAKIVDLFLRFFLSWTGKNISETQKIVAYSHLYSFTSVKCFVHWAQITRRKVLQMYDD 347
Query: 166 A-AFKQYFFT 140
+ FK ++T
Sbjct: 348 SPGFKPSYYT 357
>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
ribosomal protein L8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 253
Score = 27.1 bits (57), Expect = 3.0
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = -3
Query: 610 VRQSSTDQDHHGRGKVDIVDKYSSDVDVQKFFTALGSGVKDLVPDESTG 464
V + + D+ GR + V DVD K L SG K +VP + G
Sbjct: 115 VEEKAGDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARG 163
>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 27.1 bits (57), Expect = 3.0
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = -3
Query: 610 VRQSSTDQDHHGRGKVDIVDKYSSDVDVQKFFTALGSGVKDLVPDESTG 464
V + + D+ GR + V DVD K L SG K +VP + G
Sbjct: 115 VEEKAGDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARG 163
>SPBC725.07 |pex5||peroxisomal targeting signal receptor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 27.1 bits (57), Expect = 3.0
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = -3
Query: 283 KQSTANEKSQAMTKAQELLNAKNYPS-WVQVTRVLQNT--EPAAFKQYFFTWRDFGMSHS 113
K A++ S + K ++ +K+ W + + L+N EPA+ ++Y W DF S++
Sbjct: 170 KFEEASQISNKLEKEKDATGSKSIEELWEEHQKQLKNAGLEPASLEEYQKQWEDFLKSNN 229
>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 27.1 bits (57), Expect = 3.0
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = -3
Query: 610 VRQSSTDQDHHGRGKVDIVDKYSSDVDVQKFFTALGSGVKDLVPDESTG 464
V + + D+ GR + V DVD K L SG K +VP + G
Sbjct: 115 VEEKAGDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARG 163
>SPCC1827.02c |||cholinephosphate cytidylyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 354
Score = 26.2 bits (55), Expect = 5.3
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = -3
Query: 481 PDESTGGDDQEFERNEASNVILSEVSDATGKIKVTPLAKPFKQ 353
P+E D++E ++ E+ + L E+S + ++ P FK+
Sbjct: 34 PEEQEKKDEKEDDKEESPSKSLEEISQSVSPVEEEPRDVRFKE 76
>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 590
Score = 25.8 bits (54), Expect = 7.0
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -2
Query: 392 KDQSDATSEAFQARELESTKRVYFGHHIWQHLRLDREAV 276
K+ ++A+ F A ELE + Y HIWQ+ L+ + V
Sbjct: 33 KESTEASINMFLA-ELERLQLEYGKEHIWQNEELNLQRV 70
>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 635
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -3
Query: 478 DESTGGDDQEFERNEASNVILSEVSDATGKIKVTPLAKP 362
D+S GDD++ A + ++ + D KI PL P
Sbjct: 562 DDSFSGDDKQVVDVVAPSFVIPRLDDILNKIADKPLYSP 600
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,779,673
Number of Sequences: 5004
Number of extensions: 51744
Number of successful extensions: 170
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -