Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_L13
         (815 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41557-2|AAA83301.1|  309|Caenorhabditis elegans Hypothetical pr...    31   0.75 
Z83227-3|CAB05726.2|  241|Caenorhabditis elegans Hypothetical pr...    29   3.0  
AF040642-7|AAB94952.1|  329|Caenorhabditis elegans Collagen prot...    29   4.0  
Z98877-14|CAD56615.1|  338|Caenorhabditis elegans Hypothetical p...    29   5.3  
Z74472-4|CAA98942.1|  301|Caenorhabditis elegans Hypothetical pr...    28   9.2  

>U41557-2|AAA83301.1|  309|Caenorhabditis elegans Hypothetical
           protein C50F7.5 protein.
          Length = 309

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 21/80 (26%), Positives = 24/80 (30%), Gaps = 3/80 (3%)
 Frame = +3

Query: 438 PTXPXXXDXXPRPXXXD*XPXPXXXVXXXPGPXAPAXXPXXXXPXXXPXXPGXP---PPL 608
           P+        P P   D    P       PGP  P+  P    P   P  PG P   PP 
Sbjct: 200 PSDEPSPSGPPSPGPVDPSEDPKPSEPPSPGPVDPSDEPSPSDPPGPPGPPGPPTRRPPG 259

Query: 609 XXXGFXXKXSXPXGPXXXXP 668
                  +   P GP    P
Sbjct: 260 PPGPPTRRPPGPPGPPTRRP 279


>Z83227-3|CAB05726.2|  241|Caenorhabditis elegans Hypothetical
           protein F45B8.3 protein.
          Length = 241

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/43 (32%), Positives = 14/43 (32%)
 Frame = +1

Query: 667 PXXXPXXXXPXPXXXXPXSXXSXTPGXXRXTPPAPXXPXXXPP 795
           P   P    P P    P    S  P      PPAP  P   PP
Sbjct: 82  PYVPPAPLPPPPPPASPCCGPSPVPAPCCPPPPAPAAPCCPPP 124


>AF040642-7|AAB94952.1|  329|Caenorhabditis elegans Collagen protein
           68 protein.
          Length = 329

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/56 (28%), Positives = 16/56 (28%)
 Frame = +3

Query: 438 PTXPXXXDXXPRPXXXD*XPXPXXXVXXXPGPXAPAXXPXXXXPXXXPXXPGXPPP 605
           P  P   D  P        P     V   PGP  P   P    P   P  PG   P
Sbjct: 226 PQGPPGADGLPGNPGAPGVPGQVIEVPGTPGPAGPPGPPGPIGPPGQPGAPGSSQP 281


>Z98877-14|CAD56615.1|  338|Caenorhabditis elegans Hypothetical
           protein Y69H2.14 protein.
          Length = 338

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 16/43 (37%), Positives = 17/43 (39%)
 Frame = -2

Query: 652 GPXGXEXFXXKPXXXRGGGXPGXXGXXXGXXXXGXXAGAXGPG 524
           GP G      +P    GGG PG  G        G   GA GPG
Sbjct: 271 GPPGLAGPDGQPGHG-GGGQPGPQGPPGDDGHPGEDGGAGGPG 312


>Z74472-4|CAA98942.1|  301|Caenorhabditis elegans Hypothetical
           protein F23H12.4 protein.
          Length = 301

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/43 (34%), Positives = 16/43 (37%)
 Frame = +3

Query: 525 PGPXAPAXXPXXXXPXXXPXXPGXPPPLXXXGFXXKXSXPXGP 653
           PGP  P   P    P   P   G P P    G   + S P GP
Sbjct: 229 PGPPGPPGAPGNDGPPGPPGPKGAPGPDGPPGVDGQ-SGPPGP 270


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,004,852
Number of Sequences: 27780
Number of extensions: 120494
Number of successful extensions: 714
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)