Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_L10
         (832 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...   228   9e-61
SPBC11C11.10 ||SPBC3B8.13c|pseudouridine synthase|Schizosaccharo...    25   10.0 
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    25   10.0 

>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score =  228 bits (557), Expect = 9e-61
 Identities = 99/152 (65%), Positives = 126/152 (82%)
 Frame = -2

Query: 711 LHSAVENIQKVTQGLEKLRGXXFQRPPLISAVKRQLRVRTVYDSKLLDFDQDKNIGVFWV 532
           LH +VE  + V   +E L G  FQRPPLISAVKRQLR+R++Y+SKL++FD ++N+ VFW 
Sbjct: 134 LHDSVEGERNVASAIETLTGALFQRPPLISAVKRQLRIRSIYESKLIEFDNERNLAVFWA 193

Query: 531 SCEAGSYIRTMCVHLGLMLGVGGQMIELRRVRSGIQGEKEGMVTMHDILDAQWSYENHKD 352
           SCEAG+Y+RT+CVHLGL+LGVGG M ELRRVRSG   E + +VTMHD+LDAQW Y+N +D
Sbjct: 194 SCEAGTYMRTLCVHLGLLLGVGGHMQELRRVRSGCLSENDDIVTMHDVLDAQWIYDNTRD 253

Query: 351 ETYLRRVIKPLEGLLIAHKRIFIKDSAVNAVC 256
           E+YLRRVI+PLE LL+ +KRI +KDSAVNA+C
Sbjct: 254 ESYLRRVIRPLESLLVGYKRIVVKDSAVNAIC 285



 Score = 82.6 bits (195), Expect = 6e-17
 Identities = 34/56 (60%), Positives = 46/56 (82%)
 Frame = -1

Query: 169 KGEAVALAVALMTTSTMSSCDHGVAAKLKRVIMERDTYPRKWGLGPKASQEKKKKK 2
           KGEA+A+ +A M+T  +S+CDHGV AK+KR IMERD YPR+WGLGP++ ++K  KK
Sbjct: 314 KGEAIAVGIAQMSTVELSTCDHGVVAKVKRCIMERDVYPRRWGLGPQSMKKKTLKK 369



 Score = 45.6 bits (103), Expect = 9e-06
 Identities = 29/98 (29%), Positives = 48/98 (48%)
 Frame = -3

Query: 296 KGYLSKTALLMLFAXGAKVLLPGILRYEDGIEVDQEIVIVTX*R*GSSVGRCSDDHVYDV 117
           K  + K + +     GAK+++PG+LRYE GIEV++EIV++T      +VG      V   
Sbjct: 272 KRIVVKDSAVNAICYGAKLMIPGLLRYEAGIEVNEEIVLITTKGEAIAVGIAQMSTVELS 331

Query: 116 LMRSWCSRETQACHNGTRHVPQKMGSRTESLTRKKKKK 3
                   + + C       P++ G   +S+ +K  KK
Sbjct: 332 TCDHGVVAKVKRCIMERDVYPRRWGLGPQSMKKKTLKK 369


>SPBC11C11.10 ||SPBC3B8.13c|pseudouridine
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 407

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 687 QKVTQGLEKLRGXXFQRPPLISAVKRQ 607
           +++  GL+  RG   Q PPL SA+  Q
Sbjct: 173 EEILSGLDAFRGDISQLPPLYSALHIQ 199


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 639  RPPLISAVKRQLRVRTVYDSKLLDF 565
            RPP+ +  + QLR RT Y   LL F
Sbjct: 1750 RPPIYTRKQNQLRRRTFYRYSLLFF 1774


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,080,484
Number of Sequences: 5004
Number of extensions: 59193
Number of successful extensions: 140
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)