Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_T7_L10
(832 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1408 - 26353389-26355191 226 1e-59
03_03_0094 + 14378953-14380728 223 2e-58
04_04_0876 - 29005543-29005630,29005841-29006596,29006939-29006955 153 2e-37
05_01_0060 - 418559-418577,418655-418738,418857-418966,419467-41... 36 0.052
12_01_0400 + 3169597-3170504,3170510-3171269 31 1.1
07_03_0466 + 18474929-18475315,18476035-18476298,18476717-184767... 29 3.4
05_07_0163 - 28094574-28094726,28095248-28095382,28095771-280959... 28 7.9
>07_03_1408 - 26353389-26355191
Length = 600
Score = 226 bits (553), Expect = 1e-59
Identities = 98/151 (64%), Positives = 128/151 (84%)
Frame = -2
Query: 708 HSAVENIQKVTQGLEKLRGXXFQRPPLISAVKRQLRVRTVYDSKLLDFDQDKNIGVFWVS 529
H+AV + +V + LE L G FQRPPLISAVKRQLRVRT+Y+SKLL+ D D+++ VFW+S
Sbjct: 174 HAAVPDTARVARALEALTGAVFQRPPLISAVKRQLRVRTIYESKLLEHDADRHLAVFWIS 233
Query: 528 CEAGSYIRTMCVHLGLMLGVGGQMIELRRVRSGIQGEKEGMVTMHDILDAQWSYENHKDE 349
CEAG+Y+RT+CVHLGL+LGVG M ELRRVRSGI GE++ MVTMHD++DA+W+ +N+ DE
Sbjct: 234 CEAGTYVRTLCVHLGLLLGVGAHMQELRRVRSGILGEQDNMVTMHDVMDARWAMDNYNDE 293
Query: 348 TYLRRVIKPLEGLLIAHKRIFIKDSAVNAVC 256
TYLRR++ PLE LL ++KR+ +KDSAVNA+C
Sbjct: 294 TYLRRIVMPLEVLLTSYKRLVVKDSAVNAIC 324
Score = 87.0 bits (206), Expect = 2e-17
Identities = 35/53 (66%), Positives = 46/53 (86%)
Frame = -1
Query: 169 KGEAVALAVALMTTSTMSSCDHGVAAKLKRVIMERDTYPRKWGLGPKASQEKK 11
KGEA+A+ +A MTT+ M++CDHG AK+KRV+M+RDTYPRKWGLGP A ++KK
Sbjct: 353 KGEAIAIGIAEMTTAVMATCDHGAVAKIKRVVMDRDTYPRKWGLGPVALKKKK 405
Score = 38.3 bits (85), Expect = 0.007
Identities = 15/41 (36%), Positives = 29/41 (70%)
Frame = -3
Query: 296 KGYLSKTALLMLFAXGAKVLLPGILRYEDGIEVDQEIVIVT 174
K + K + + GAK+++PG+LR+E+ I+V +E+V++T
Sbjct: 311 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIDVGEEVVLMT 351
>03_03_0094 + 14378953-14380728
Length = 591
Score = 223 bits (544), Expect = 2e-58
Identities = 97/151 (64%), Positives = 126/151 (83%)
Frame = -2
Query: 708 HSAVENIQKVTQGLEKLRGXXFQRPPLISAVKRQLRVRTVYDSKLLDFDQDKNIGVFWVS 529
H+AV + +V + LE L G FQRPPLISAVKRQLRVRT+Y+SKLL+ D D+++ VFW+S
Sbjct: 178 HAAVPDTARVARALEALTGAVFQRPPLISAVKRQLRVRTIYESKLLEHDADRHLAVFWIS 237
Query: 528 CEAGSYIRTMCVHLGLMLGVGGQMIELRRVRSGIQGEKEGMVTMHDILDAQWSYENHKDE 349
CEAG+Y+RT+CVHLGL+LGVG M ELRRVRSGI GE + MVTMHD++DA+W+ +N DE
Sbjct: 238 CEAGTYVRTLCVHLGLLLGVGAHMQELRRVRSGILGETDNMVTMHDVMDARWAMDNFNDE 297
Query: 348 TYLRRVIKPLEGLLIAHKRIFIKDSAVNAVC 256
+YLRR++ PLE LL ++KR+ +KDSAVNA+C
Sbjct: 298 SYLRRIVMPLEVLLTSYKRLVVKDSAVNAIC 328
Score = 87.0 bits (206), Expect = 2e-17
Identities = 35/53 (66%), Positives = 46/53 (86%)
Frame = -1
Query: 169 KGEAVALAVALMTTSTMSSCDHGVAAKLKRVIMERDTYPRKWGLGPKASQEKK 11
KGEA+A+ +A MTT+ M++CDHG AK+KRV+M+RDTYPRKWGLGP A ++KK
Sbjct: 357 KGEAIAIGIAEMTTAVMATCDHGAVAKIKRVVMDRDTYPRKWGLGPVALKKKK 409
Score = 39.1 bits (87), Expect = 0.004
Identities = 16/41 (39%), Positives = 29/41 (70%)
Frame = -3
Query: 296 KGYLSKTALLMLFAXGAKVLLPGILRYEDGIEVDQEIVIVT 174
K + K + + GAK+++PG+LR+E+ IEV +E+V++T
Sbjct: 315 KRLVVKDSAVNAICYGAKLMIPGLLRFENEIEVGEEVVLMT 355
>04_04_0876 - 29005543-29005630,29005841-29006596,29006939-29006955
Length = 286
Score = 153 bits (371), Expect = 2e-37
Identities = 67/103 (65%), Positives = 86/103 (83%)
Frame = -2
Query: 675 QGLEKLRGXXFQRPPLISAVKRQLRVRTVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMC 496
+ LE L G FQR PLISAVKRQLRVRT+Y+SKLL+ D ++++ VFW+SCEAG+Y+RT+C
Sbjct: 159 RALEALTGAMFQRLPLISAVKRQLRVRTIYESKLLEHDAERHLAVFWISCEAGTYVRTLC 218
Query: 495 VHLGLMLGVGGQMIELRRVRSGIQGEKEGMVTMHDILDAQWSY 367
VHLGL+LGVG M EL RVRSGI GE++ MVTMHD++DA+ +
Sbjct: 219 VHLGLLLGVGAHMQELHRVRSGIHGEQDNMVTMHDVMDARQEF 261
>05_01_0060 -
418559-418577,418655-418738,418857-418966,419467-419577,
419914-419992,420182-420264,420347-420439,420902-421810
Length = 495
Score = 35.5 bits (78), Expect = 0.052
Identities = 32/96 (33%), Positives = 45/96 (46%), Gaps = 17/96 (17%)
Frame = -2
Query: 708 HSAVENIQKVTQGLEKLRGXXFQRPPLISAVK--------RQLRVRTVYDS----KLLDF 565
H E+I+KV RG +Q PP+ SA+K + R TV S + F
Sbjct: 397 HIKDEDIRKVAASF---RGEIWQVPPMFSAIKVGGEKMYDKARRGETVELSPRRISIHQF 453
Query: 564 D-----QDKNIGVFWVSCEAGSYIRTMCVHLGLMLG 472
D +D+ +F V C G+YIR++C LG LG
Sbjct: 454 DIERSLEDRQNLIFRVICSKGTYIRSLCADLGKALG 489
>12_01_0400 + 3169597-3170504,3170510-3171269
Length = 555
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +3
Query: 18 SCEAFGPRPHFLGYVSRSIMTRLSFAATP 104
SCEA P H Y +R + R+S AATP
Sbjct: 211 SCEATSPVDHLAYYFARGLKLRISGAATP 239
>07_03_0466 +
18474929-18475315,18476035-18476298,18476717-18476755,
18476756-18476878,18477118-18477240
Length = 311
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -2
Query: 570 DFDQDKNIGVFWVSCEAGSYIRTMCVHLGLMLGVGGQMIELRRVR-SGIQGEKE 412
+F ++ IG +++T C HLGL G ++ ++++ +G+QG K+
Sbjct: 80 NFSRELKIGEGGFGSVYKGFLKTSCGHLGLRNDSGNVVVAVKKLNPNGMQGHKQ 133
>05_07_0163 -
28094574-28094726,28095248-28095382,28095771-28095923,
28096010-28096208,28096312-28096349,28096849-28097020,
28097666-28097788,28097869-28098284
Length = 462
Score = 28.3 bits (60), Expect = 7.9
Identities = 16/59 (27%), Positives = 33/59 (55%)
Frame = -2
Query: 624 SAVKRQLRVRTVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLMLGVGGQMIEL 448
S ++ L +TVY+++++ FDQDK++ V + +R + V + L VG ++ +
Sbjct: 177 SDLRVTLADQTVYEAQVVGFDQDKDVAVLRIKAPTDK-LRPVPVGVSADLLVGQKVFAI 234
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,895,928
Number of Sequences: 37544
Number of extensions: 421947
Number of successful extensions: 901
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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