Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_L10
         (832 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    25   0.86 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   4.6  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   4.6  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   8.0  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   8.0  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 25.0 bits (52), Expect = 0.86
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -3

Query: 110 RSWCSRETQACHNGT 66
           RSW +RE+Q C+N +
Sbjct: 353 RSWVTRESQICNNSS 367


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 9/34 (26%), Positives = 15/34 (44%)
 Frame = -3

Query: 104 WCSRETQACHNGTRHVPQKMGSRTESLTRKKKKK 3
           +C R      +    +PQ +  R +   +KKK K
Sbjct: 46  YCGRRPSTFGSSNEALPQPISKRKDKEHKKKKSK 79


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 9/34 (26%), Positives = 15/34 (44%)
 Frame = -3

Query: 104 WCSRETQACHNGTRHVPQKMGSRTESLTRKKKKK 3
           +C R      +    +PQ +  R +   +KKK K
Sbjct: 46  YCGRRPSTFGSSNEALPQPISKRKDKEHKKKKSK 79


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -1

Query: 604 ACQDGVRQ*TPGFRPGQEYWGVLG 533
           AC   V   T   +    YWG+LG
Sbjct: 321 ACMRSVDAKTISVQQWNSYWGILG 344


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -1

Query: 604 ACQDGVRQ*TPGFRPGQEYWGVLG 533
           AC   V   T   +    YWG+LG
Sbjct: 321 ACMRSVDAKTISVQQWNSYWGILG 344


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,602
Number of Sequences: 438
Number of extensions: 3991
Number of successful extensions: 24
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26581563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)