Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_L05
         (840 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315...    33   0.37 
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373...    31   1.5  
01_01_1018 - 8046819-8046876,8046995-8047212,8048099-8048177,804...    30   2.6  
07_03_0846 - 21983581-21986055                                         29   3.5  
05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581     29   3.5  
03_05_0183 - 21681673-21682524                                         29   4.6  
01_06_0695 - 31292622-31293317                                         28   8.1  

>02_04_0232 +
           21130122-21130454,21130895-21131053,21131424-21131582,
           21132420-21132512,21133321-21133437,21133623-21133697,
           21133878-21134104,21134200-21135073
          Length = 678

 Score = 32.7 bits (71), Expect = 0.37
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = +1

Query: 76  PSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSID 204
           PS TP  ER  S+D   PR     Y   R+RD    K+  S D
Sbjct: 365 PSDTPHLERSQSSDRRRPRSSDPRYTPSRTRDEDAHKQHSSRD 407


>06_03_1055 -
           27234824-27234838,27236087-27236125,27236322-27237388,
           27237422-27237630,27237650-27238053
          Length = 577

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = -2

Query: 344 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 210
           A+ A +GK +   E  E   S+QCD T  + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473


>01_01_1018 - 8046819-8046876,8046995-8047212,8048099-8048177,
            8048455-8048540,8048698-8048983,8049063-8049205,
            8049308-8049508,8049626-8049754,8050463-8050738,
            8050823-8051098,8051364-8052364,8052452-8052634,
            8052865-8052937,8053205-8053313,8053622-8053785
          Length = 1093

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = +2

Query: 644  CHKPVIPGGNFSGTSC*KLFILKGSIGRAFAVPMRTEH 757
            CH P++ G ++  TSC   F+ +         P++  H
Sbjct: 953  CHHPIVSGSSWVCTSCKNFFLCERCYAEELNTPLKDRH 990


>07_03_0846 - 21983581-21986055
          Length = 824

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +1

Query: 202 DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 351
           DL+D  G  +R    +C+T    S     PD   S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373


>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
          Length = 311

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -2

Query: 431 GHLVHALGR-AAGGAKLPSAGLCLNASKAEASLA 333
           G LV  L R   GG    SAG+C   S+ +ASLA
Sbjct: 203 GRLVETLARDGGGGGGAYSAGVCFYGSRMDASLA 236


>03_05_0183 - 21681673-21682524
          Length = 283

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 644 SQAFIATLLFDPSMSALPIIAKQNSPS 564
           SQAF A LL D + +A+P++  Q  P+
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQKRPA 255


>01_06_0695 - 31292622-31293317
          Length = 231

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 16/45 (35%), Positives = 18/45 (40%)
 Frame = +1

Query: 28  PGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLR 162
           P     L   Q D   PS++      SST  S P HR  L P  R
Sbjct: 3   PSTKQLLPMPQQDPNSPSSSTSSSSSSSTSPSHPHHRAPLPPSPR 47


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,994,959
Number of Sequences: 37544
Number of extensions: 503034
Number of successful extensions: 1436
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1436
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)