Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_L02
         (868 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...    86   5e-18
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    85   1e-17
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    37   0.003
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual    29   1.1  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   6.0  
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch...    26   8.0  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score = 86.2 bits (204), Expect = 5e-18
 Identities = 50/95 (52%), Positives = 59/95 (62%), Gaps = 8/95 (8%)
 Frame = -2

Query: 780 PGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCN 601
           PG FTN I   +REPRL++V DP  D Q I EAS+VNIPVIALC+TDS L  VDIAIP N
Sbjct: 107 PGNFTNYITRTYREPRLIVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTN 166

Query: 600 T---QVFPLYWF----DVV-VVGT*SVEASWCASP 520
               +   L W+    +V+ V GT S  A W   P
Sbjct: 167 NKGRKSIGLIWYLLAREVLRVRGTLSRSAPWDVMP 201



 Score = 54.8 bits (126), Expect = 2e-08
 Identities = 24/38 (63%), Positives = 29/38 (76%)
 Frame = -3

Query: 596 KSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFF 483
           K   SIGL+W+LLAREVLR+RG L R   WDV+ DL+F
Sbjct: 168 KGRKSIGLIWYLLAREVLRVRGTLSRSAPWDVMPDLYF 205



 Score = 45.2 bits (102), Expect = 1e-05
 Identities = 20/26 (76%), Positives = 22/26 (84%)
 Frame = -1

Query: 859 SRPFGQRAVXKFAAHTGATXIAGRFT 782
           +R +G RAV KFAAHTGAT IAGRFT
Sbjct: 81  TRTYGHRAVLKFAAHTGATAIAGRFT 106


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 85.0 bits (201), Expect = 1e-17
 Identities = 40/62 (64%), Positives = 46/62 (74%)
 Frame = -2

Query: 780 PGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCN 601
           PG FTN I   +REPRL+IV DP  D Q I EAS+VNIPVIALC+TDS L  VD+AIP N
Sbjct: 108 PGNFTNYITRTYREPRLIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPIN 167

Query: 600 TQ 595
            +
Sbjct: 168 NK 169



 Score = 51.2 bits (117), Expect = 2e-07
 Identities = 23/38 (60%), Positives = 28/38 (73%)
 Frame = -3

Query: 596 KSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFF 483
           K   SIGL W+LLAREVLRLRG + R   W+V+ DL+F
Sbjct: 169 KGYKSIGLAWYLLAREVLRLRGNISRTTAWEVMPDLYF 206



 Score = 49.6 bits (113), Expect = 6e-07
 Identities = 22/26 (84%), Positives = 23/26 (88%)
 Frame = -1

Query: 859 SRPFGQRAVXKFAAHTGATXIAGRFT 782
           SRP+G RAV KFAAHTGAT IAGRFT
Sbjct: 82  SRPYGHRAVLKFAAHTGATAIAGRFT 107


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = -2

Query: 738 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCN 601
           P L+++L+P ++     EA   ++P I + +TD+  R V   IP N
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPAN 225


>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 613

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +1

Query: 493 STTTSQRWSRGSTPRSLNTSRANNHHIKPIEWEDLG 600
           S   S RW  G+T  S     A++  I PIEWE +G
Sbjct: 439 SNNISVRWFLGAT--SAQNRNASSEAILPIEWEAVG 472


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 581 IGLMWWLLAREVLRLRGVLPRDQRWD 504
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 611

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -1

Query: 535 VVCFPVTSAGMLWLICSSXRDPEESEKD 452
           V+ FP TS+G   LI S    PEE  KD
Sbjct: 571 VIAFPKTSSGADLLIGSPSAIPEEMLKD 598


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,050,331
Number of Sequences: 5004
Number of extensions: 57913
Number of successful extensions: 159
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)