Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_L02
         (868 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...    92   5e-19
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...    92   5e-19
02_01_0107 + 785993-786359,786773-787703,787807-787975,788472-78...    29   4.8  
06_03_0543 + 21967787-21970261                                         29   6.4  
04_01_0553 - 7128786-7128998,7129087-7129242,7129577-7130380           29   6.4  

>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score = 92.3 bits (219), Expect = 5e-19
 Identities = 39/62 (62%), Positives = 48/62 (77%)
 Frame = -2

Query: 780 PGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCN 601
           PG FTNQ+Q +F EPRLLI+ DP  DHQPI E++  NIP IA C+TDSP+R+VDI IP N
Sbjct: 109 PGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPAN 168

Query: 600 TQ 595
            +
Sbjct: 169 NK 170



 Score = 51.2 bits (117), Expect = 1e-06
 Identities = 22/41 (53%), Positives = 29/41 (70%)
 Frame = -3

Query: 605 ATPKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFF 483
           A  K   SIG ++WLLAR VL++RG +    +WDV+VDLFF
Sbjct: 167 ANNKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFF 207



 Score = 41.1 bits (92), Expect = 0.001
 Identities = 19/30 (63%), Positives = 22/30 (73%)
 Frame = -1

Query: 859 SRPFGQRAVXKFAAHTGATXIAGRFTXRCF 770
           +RP+GQRAV KFA +TGA  IAGR T   F
Sbjct: 83  ARPYGQRAVLKFAQYTGAHAIAGRHTPGTF 112


>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score = 92.3 bits (219), Expect = 5e-19
 Identities = 39/62 (62%), Positives = 48/62 (77%)
 Frame = -2

Query: 780 PGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCN 601
           PG FTNQ+Q +F EPRLLI+ DP  DHQPI E++  NIP IA C+TDSP+R+VDI IP N
Sbjct: 109 PGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPAN 168

Query: 600 TQ 595
            +
Sbjct: 169 NK 170



 Score = 51.2 bits (117), Expect = 1e-06
 Identities = 22/41 (53%), Positives = 30/41 (73%)
 Frame = -3

Query: 605 ATPKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFF 483
           A  K  +SIG ++WLLAR VL++RG +    +WDV+VDLFF
Sbjct: 167 ANNKGRNSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFF 207



 Score = 41.1 bits (92), Expect = 0.001
 Identities = 19/30 (63%), Positives = 22/30 (73%)
 Frame = -1

Query: 859 SRPFGQRAVXKFAAHTGATXIAGRFTXRCF 770
           +RP+GQRAV KFA +TGA  IAGR T   F
Sbjct: 83  ARPYGQRAVLKFAQYTGAHAIAGRHTPGTF 112


>02_01_0107 +
           785993-786359,786773-787703,787807-787975,788472-788588,
           788815-788961
          Length = 576

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 13/47 (27%), Positives = 27/47 (57%)
 Frame = +1

Query: 526 STPRSLNTSRANNHHIKPIEWEDLGVAWDSNVHKS*WGVCVAQSNHR 666
           S   S++  + +  H +P + +D+G+AW+ + +   W   V++S HR
Sbjct: 224 SETNSISDKQGDEEH-QPAK-KDVGIAWEDDENNEGWLPAVSRSTHR 268


>06_03_0543 + 21967787-21970261
          Length = 824

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -3

Query: 575 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 486
           L W++L RE  +LRGV P +  ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501


>04_01_0553 - 7128786-7128998,7129087-7129242,7129577-7130380
          Length = 390

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +1

Query: 466 LQGHG*KNKSTTTSQRWSRGSTPRSLNTSRANNHHIKPIEWEDLGVA 606
           + GH  K K T  + R    S  RSL TS++    I  + +ED GV+
Sbjct: 321 ISGHSRKRKRTPRANRNQIHSKRRSLITSKSEISKIMKMTYEDDGVS 367


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,429,039
Number of Sequences: 37544
Number of extensions: 424459
Number of successful extensions: 1124
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1124
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)