Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_L02
         (868 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z37983-1|CAA86061.1|  276|Caenorhabditis elegans Hypothetical pr...    93   3e-19
Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical p...    30   2.5  
Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical pr...    30   2.5  
Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical pr...    30   2.5  
AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.      30   2.5  

>Z37983-1|CAA86061.1|  276|Caenorhabditis elegans Hypothetical
           protein B0393.1 protein.
          Length = 276

 Score = 92.7 bits (220), Expect = 3e-19
 Identities = 37/62 (59%), Positives = 48/62 (77%)
 Frame = -2

Query: 780 PGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCN 601
           PG  TNQIQ  F+EPRLL++ DP  DHQ +TEASYV +PVI+  NT+SPL+ +DI +PCN
Sbjct: 105 PGCLTNQIQKTFKEPRLLVISDPRIDHQAVTEASYVGVPVISFVNTESPLKLIDIGVPCN 164

Query: 600 TQ 595
            +
Sbjct: 165 NK 166



 Score = 45.2 bits (102), Expect = 6e-05
 Identities = 19/29 (65%), Positives = 23/29 (79%)
 Frame = -1

Query: 859 SRPFGQRAVXKFAAHTGATXIAGRFTXRC 773
           +RP+ QRA+ KFAAHTGAT I GRF+  C
Sbjct: 79  ARPYAQRALLKFAAHTGATAIFGRFSPGC 107



 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 20/43 (46%), Positives = 28/43 (65%), Gaps = 5/43 (11%)
 Frame = -3

Query: 596 KSSHSIGLMWWLLAREVLRLRGVLPRDQRW-----DVVVDLFF 483
           K   SIGLMWW+LARE+L LRG + R   +     +++ DL+F
Sbjct: 166 KGERSIGLMWWMLAREILILRGKISRQTGFVLEGKEIMPDLYF 208


>Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical
            protein C47D12.1c protein.
          Length = 4053

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = -3

Query: 797  CGTFHXQVLLLTRSKLHSVNLVS*LYWTLHKTINPLLKLHMSTFL*LLCATQTPH 633
            CG+ H  +  + + +LHS+NL + LYW L + +  +     S F+ +LC     H
Sbjct: 3336 CGS-HEVMNRVIKKQLHSLNLFNWLYW-LPQLVTDVRYKPNSNFVLILCKMAAAH 3388


>Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical protein
            C47D12.1b protein.
          Length = 4061

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = -3

Query: 797  CGTFHXQVLLLTRSKLHSVNLVS*LYWTLHKTINPLLKLHMSTFL*LLCATQTPH 633
            CG+ H  +  + + +LHS+NL + LYW L + +  +     S F+ +LC     H
Sbjct: 3347 CGS-HEVMNRVIKKQLHSLNLFNWLYW-LPQLVTDVRYKPNSNFVLILCKMAAAH 3399


>Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical protein
            C47D12.1a protein.
          Length = 4064

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = -3

Query: 797  CGTFHXQVLLLTRSKLHSVNLVS*LYWTLHKTINPLLKLHMSTFL*LLCATQTPH 633
            CG+ H  +  + + +LHS+NL + LYW L + +  +     S F+ +LC     H
Sbjct: 3347 CGS-HEVMNRVIKKQLHSLNLFNWLYW-LPQLVTDVRYKPNSNFVLILCKMAAAH 3399


>AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.
          Length = 4064

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = -3

Query: 797  CGTFHXQVLLLTRSKLHSVNLVS*LYWTLHKTINPLLKLHMSTFL*LLCATQTPH 633
            CG+ H  +  + + +LHS+NL + LYW L + +  +     S F+ +LC     H
Sbjct: 3347 CGS-HEVMNRVIKKQLHSLNLFNWLYW-LPQLVTDVRYKPNSNFVLILCKMAAAH 3399


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,435,475
Number of Sequences: 27780
Number of extensions: 347394
Number of successful extensions: 1013
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1013
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2171433726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)