Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_L01
         (775 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   122   6e-29
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   118   7e-28
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    42   1e-04
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    30   0.42 
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    28   1.3  
SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual        26   5.2  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   5.2  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  122 bits (294), Expect = 6e-29
 Identities = 58/87 (66%), Positives = 67/87 (77%)
 Frame = -1

Query: 628 REPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWW 449
           REPRL++V DP  D Q I EAS+VNIPVIALC+TDS L  VDIAIP N K   SIGL+W+
Sbjct: 119 REPRLIVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWY 178

Query: 448 LLAREVLRLRGVLPRDQRWDVVVDLFF 368
           LLAREVLR+RG L R   WDV+ DL+F
Sbjct: 179 LLAREVLRVRGTLSRSAPWDVMPDLYF 205



 Score = 49.6 bits (113), Expect = 5e-07
 Identities = 23/36 (63%), Positives = 25/36 (69%)
 Frame = -2

Query: 774 ENPXXVXVXXSRPFGQRXVXKFAAHTGXTXIAGRFT 667
           ENP  V V  +R +G R V KFAAHTG T IAGRFT
Sbjct: 71  ENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFT 106


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  118 bits (285), Expect = 7e-28
 Identities = 57/87 (65%), Positives = 66/87 (75%)
 Frame = -1

Query: 628 REPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWW 449
           REPRL+IV DP  D Q I EAS+VNIPVIALC+TDS L  VD+AIP N K   SIGL W+
Sbjct: 120 REPRLIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWY 179

Query: 448 LLAREVLRLRGVLPRDQRWDVVVDLFF 368
           LLAREVLRLRG + R   W+V+ DL+F
Sbjct: 180 LLAREVLRLRGNISRTTAWEVMPDLYF 206



 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 25/36 (69%), Positives = 26/36 (72%)
 Frame = -2

Query: 774 ENPXXVXVXXSRPFGQRXVXKFAAHTGXTXIAGRFT 667
           ENP  V V  SRP+G R V KFAAHTG T IAGRFT
Sbjct: 72  ENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFT 107


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 20/62 (32%), Positives = 33/62 (53%)
 Frame = -1

Query: 622 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLL 443
           P L+++L+P ++     EA   ++P I + +TD+  R V   IP N  S     L+  LL
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLL 239

Query: 442 AR 437
           +R
Sbjct: 240 SR 241


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 29.9 bits (64), Expect = 0.42
 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
 Frame = -1

Query: 685 YCGTFHXQVLLLTRSKLHSREPRLLIVLDPAQDHQPI---TEASYVNIPVIALCNTDSPL 515
           + G  +  VL    ++  + +P + ++     D   +   T A    +  + LC+ +S  
Sbjct: 35  HLGHLYSLVLTDAIARFQNLKPDVSVISSTGTDEHGLKVQTVAQTEGVSPLQLCDRNSK- 93

Query: 514 RFVDIAIPCNTKSSHSI 464
           RF D+A+  NTK +H I
Sbjct: 94  RFADLAVAANTKFTHFI 110


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = +3

Query: 372 NKSTTTSQRWSRG---STPRSLSTSRANNHHIKPIE 470
           N+S+T +++ SR    ST RS STS AN H  K  E
Sbjct: 106 NRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKE 141


>SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +2

Query: 350 LQGSRXEEQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVG-RLGVAW 493
           L G+R  +QI   +P     KH  +   F  Q+     N VG   GVAW
Sbjct: 187 LNGTRVTDQILQLVPNRAVFKHALRAIKFWAQRRAIYANVVGFPGGVAW 235


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 466 IGLMWWLLAREVLRLRGVLPRDQRWD 389
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,748,810
Number of Sequences: 5004
Number of extensions: 52451
Number of successful extensions: 125
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)