Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_T7_K23
(860 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_07_0135 + 13308839-13308899,13310146-13310495,13310574-133107... 32 0.51
07_03_0965 - 22996575-22999112,22999202-22999636,22999717-229998... 32 0.68
06_01_0107 - 854756-854883,855126-856968 32 0.68
01_06_0451 - 29476892-29477516,29477600-29477843,29478313-294787... 30 2.7
02_05_0409 - 28723534-28724646 29 3.6
11_07_0002 - 27171791-27172222 29 4.8
09_02_0279 + 6702517-6702948 29 4.8
06_01_0741 - 5510159-5510581,5510862-5511124,5511223-5511400,551... 29 4.8
12_02_0017 - 12357029-12357070,12357434-12357503,12357722-123578... 29 6.3
09_01_0043 + 790859-790873,791410-791603,792521-792605,792719-79... 29 6.3
07_03_1389 + 26212117-26212119,26212721-26212875,26213402-262134... 29 6.3
06_03_0106 + 16702019-16702600 29 6.3
05_04_0454 + 21383068-21384525 29 6.3
09_04_0156 - 15190502-15190903,15191149-15191154,15191512-15192351 26 7.3
11_03_0140 - 10637818-10638059,10638189-10638461,10639963-106404... 28 8.3
01_06_1151 + 34937738-34937855,34937959-34939244 28 8.3
>10_07_0135 +
13308839-13308899,13310146-13310495,13310574-13310709,
13310806-13310942,13311041-13311164,13313393-13313871
Length = 428
Score = 32.3 bits (70), Expect = 0.51
Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Frame = +2
Query: 173 RPILSEVRTRMR*GGYRGQHYNQTARLTPRTPSRRSLRGESKALKRQPSRYGSPSGRPDS 352
RP +SEV +++ + YN T+ P+ +RR R S ++ R P R PS R S
Sbjct: 355 RPQMSEVLEKLQ--QLQDPKYNVTS---PQVDTRR--RSSSGSVPRSPMRM-QPSPRRLS 406
Query: 353 AAGVPEYPAG-PEPACR 400
A+ P AG P PACR
Sbjct: 407 ASASPLPAAGSPLPACR 423
>07_03_0965 -
22996575-22999112,22999202-22999636,22999717-22999801,
22999888-22999957,23000050-23000293,23000396-23000482,
23000655-23000706,23000830-23001226,23001324-23001648,
23001748-23001914,23002007-23002547
Length = 1646
Score = 31.9 bits (69), Expect = 0.68
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +2
Query: 221 RGQHYNQTARLTPRTPSRRSLRGESKALKRQPSRYGSPSGRPD--SAAGVPEYPAGPEPA 394
R H ++ + L P RR R ES+A +P+ PSG+PD SAA V E G A
Sbjct: 417 REDHRSRDSELRPGESDRRDHRPESRA---EPTPPAQPSGKPDGESAAVVSEARNGEATA 473
>06_01_0107 - 854756-854883,855126-856968
Length = 656
Score = 31.9 bits (69), Expect = 0.68
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +2
Query: 230 HYNQTARLTPRT--PSRRSLRGESKALKRQPSRYGSPSGRPDSAAGVPEYPAGPEPACR 400
+ + T R T R + R + AL+ P RY SP+ R AAG+P P EP R
Sbjct: 547 YVDATTRATDRAYAEATRGVDLRGGALRGAPRRYVSPT-RYTGAAGIPYRPVSTEPVLR 604
>01_06_0451 -
29476892-29477516,29477600-29477843,29478313-29478714,
29481164-29481358,29481418-29481537,29481615-29481683,
29481901-29481999,29483857-29483946,29484049-29484180,
29485062-29485173
Length = 695
Score = 29.9 bits (64), Expect = 2.7
Identities = 17/59 (28%), Positives = 21/59 (35%)
Frame = +2
Query: 215 GYRGQHYNQTARLTPRTPSRRSLRGESKALKRQPSRYGSPSGRPDSAAGVPEYPAGPEP 391
G G H++ PS + RG R P Y SPS P + V G P
Sbjct: 229 GRSGLHHSPAPAPVGLPPSEGNARGNPAYAPRHPHEYHSPSNSPGPGSAVVGSRLGSRP 287
>02_05_0409 - 28723534-28724646
Length = 370
Score = 29.5 bits (63), Expect = 3.6
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = -1
Query: 458 SALQRSYERAAGWRCIASRPGRLVLVQRGIPGHQRHCLGGLTGCRTETADVSEP 297
+AL SY ++S G LVL++R P H H + LTG + P
Sbjct: 79 AALLSSYPVPGDATLLSSSRGHLVLLRRRDPFHGLHLVDALTGATRHALPLPSP 132
>11_07_0002 - 27171791-27172222
Length = 143
Score = 29.1 bits (62), Expect = 4.8
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -3
Query: 396 QAGSGPAGYSGTPAALSGRPDG 331
+AGS PAG G+PA G P G
Sbjct: 65 RAGSTPAGVRGSPAGAGGSPGG 86
>09_02_0279 + 6702517-6702948
Length = 143
Score = 29.1 bits (62), Expect = 4.8
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -3
Query: 396 QAGSGPAGYSGTPAALSGRPDG 331
+AGS PAG G+PA G P G
Sbjct: 65 RAGSTPAGVRGSPAGAGGSPGG 86
>06_01_0741 -
5510159-5510581,5510862-5511124,5511223-5511400,
5511411-5511698,5511801-5511899,5511973-5512440,
5512559-5512744,5512887-5513004,5513035-5513228
Length = 738
Score = 29.1 bits (62), Expect = 4.8
Identities = 14/25 (56%), Positives = 14/25 (56%)
Frame = +2
Query: 332 PSGRPDSAAGVPEYPAGPEPACRVG 406
P GRP SAAG AGP A R G
Sbjct: 655 PDGRPGSAAGASTSSAGPLAAARGG 679
>12_02_0017 -
12357029-12357070,12357434-12357503,12357722-12357852,
12358836-12358882,12359762-12360044,12360547-12362413,
12362454-12362665
Length = 883
Score = 28.7 bits (61), Expect = 6.3
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = +2
Query: 278 SLRGESKALKRQPSRYGSPSGRP---DSAAGVPEYPAGPEPA 394
+L GE R PSR+ +PS P S+A P P+G PA
Sbjct: 68 NLSGEPAPTPRAPSRHATPSSSPPSTPSSASAPP-PSGRHPA 108
>09_01_0043 +
790859-790873,791410-791603,792521-792605,792719-793075
Length = 216
Score = 28.7 bits (61), Expect = 6.3
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -3
Query: 396 QAGSGPAGYSGTPAALSGRPDGLPYRDG 313
++GSG AG G+ A GR DG RDG
Sbjct: 118 RSGSGKAGCVGSRADQDGRLDGREVRDG 145
>07_03_1389 +
26212117-26212119,26212721-26212875,26213402-26213479,
26214211-26214375,26214453-26214554,26214661-26214786,
26215454-26215490
Length = 221
Score = 28.7 bits (61), Expect = 6.3
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +2
Query: 185 SEVRTRMR*GGYRGQHYNQTARLTPR--TPSRRSLRGESKALKRQPS-RY 325
SE+R+R R G RG+ Y+Q +PR P R S + R PS RY
Sbjct: 125 SEMRSRDRISGSRGRSYDQRYSRSPRYSPPPRGRSPYRSPSYSRSPSPRY 174
>06_03_0106 + 16702019-16702600
Length = 193
Score = 28.7 bits (61), Expect = 6.3
Identities = 18/47 (38%), Positives = 22/47 (46%)
Frame = +2
Query: 251 LTPRTPSRRSLRGESKALKRQPSRYGSPSGRPDSAAGVPEYPAGPEP 391
LTP P LRG A R P Y + G +S+A P P+ P P
Sbjct: 118 LTPANPPEFLLRGTLAACHRAPPFYMAAGGFGESSAS-PLAPSLPNP 163
>05_04_0454 + 21383068-21384525
Length = 485
Score = 28.7 bits (61), Expect = 6.3
Identities = 27/93 (29%), Positives = 33/93 (35%), Gaps = 6/93 (6%)
Frame = +1
Query: 139 PLNDSPALLHPTSDPL*GQNPDEVGGLPRSTLQPDGAAHP---KDAQPTEPSRRIEGSET 309
P+ D A L P D + D+ LPR PDGA P + + R S
Sbjct: 78 PVLDLDAPLSPLDDDDDDEVEDDDHDLPRPPDDPDGARSPGPSHSERMAKTDRSTTASHA 137
Query: 310 SAVSXXXXXXXXXXXXXXXGI---PRWTRTSLP 399
A S G+ PR T TSLP
Sbjct: 138 EAASTVTTPCSHAADDGGHGVTTSPRTTTTSLP 170
>09_04_0156 - 15190502-15190903,15191149-15191154,15191512-15192351
Length = 415
Score = 26.2 bits (55), Expect(2) = 7.3
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Frame = +3
Query: 135 PPTKRLPCTLTPDVRSSLRSEPG*--GRGVTAVNTTTRRRGSPQGRPA 272
P +R P +TP V + P RG A + + RG P G PA
Sbjct: 65 PWWRRSPSAVTPPVYPHVERSPSPPIARGWPADDDERQERGEPSGSPA 112
Score = 20.6 bits (41), Expect(2) = 7.3
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +3
Query: 345 QTVPLVSRNTPLDQNQPA 398
Q P V ++TPL +PA
Sbjct: 153 QPAPHVEQSTPLPAKEPA 170
>11_03_0140 -
10637818-10638059,10638189-10638461,10639963-10640473,
10640556-10640768,10642717-10642784,10642893-10642958,
10644862-10644961
Length = 490
Score = 28.3 bits (60), Expect = 8.3
Identities = 17/63 (26%), Positives = 25/63 (39%)
Frame = +1
Query: 133 THPLNDSPALLHPTSDPL*GQNPDEVGGLPRSTLQPDGAAHPKDAQPTEPSRRIEGSETS 312
T P+N +P L +NP T G A+P D+ +P R ET
Sbjct: 94 TEPVNTTPTTLPTQGGSSAAENPSTSSNQSTGTSGASGFANPTDS-VAQPPRSTSRDETP 152
Query: 313 AVS 321
++S
Sbjct: 153 SIS 155
>01_06_1151 + 34937738-34937855,34937959-34939244
Length = 467
Score = 28.3 bits (60), Expect = 8.3
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Frame = +2
Query: 146 TTPLHSYTRRPILSEVRTRMR*GGYRGQH--YNQTARLTPRTP-SRRSLRGESKALKRQP 316
+ P ++ R + + R+ + G RG +++ + L P + +RR + G+ A +
Sbjct: 94 SAPYAAFDRGSVRAGSRSGEQSGEERGGSPMHSRVSELRPTSRRTRRPMSGDMGAFRDDG 153
Query: 317 SRYGSPSGRPDSAAGVPEYPAGP 385
S YGS + P SAA A P
Sbjct: 154 SSYGSDNDVPTSAAASYRRRASP 176
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,024,692
Number of Sequences: 37544
Number of extensions: 366336
Number of successful extensions: 1425
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1424
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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