Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_K18
         (774 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    30   0.32 
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    27   3.0  
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    26   6.9  
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    26   6.9  
SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|ch...    25   9.1  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    25   9.1  

>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 30.3 bits (65), Expect = 0.32
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +2

Query: 92  TQWRHRASGSLSMRHWYLAKQPCPDSTCVTLNDRXTVPSPEPVVEYW 232
           ++W + ASGS ++   Y+ K P      + L  R  V + E V EY+
Sbjct: 388 SEWAYLASGSANVVFEYVGKNPYFQDKVIRLRRRGQVFTTEQVYEYY 434


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 590 FRSISILPFLSKVIDACAHKQLSQFIFRKNL 498
           F ++ +LPFL+KV + C H  L     +++L
Sbjct: 117 FFTLDLLPFLNKVCECCNHMLLDNPKIKQDL 147


>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 14/55 (25%), Positives = 24/55 (43%)
 Frame = -2

Query: 533 KQLSQFIFRKNLLSPYKSGFRPGHSTVSALLKVVGDIRAGMQDTLASLYRWREEE 369
           +++SQF      +   K G  PG   +S   K  GD+     +     Y+W ++E
Sbjct: 299 ERVSQFAISSQEVGDIKKGSLPGLEILSKPGKADGDVVMVRVNNDVEAYQWSQKE 353


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 359 GSRLVQQQIALRREELRQALVAE 291
           GSR +QQ++A   EE R+A+  E
Sbjct: 410 GSRFIQQKLATATEEEREAVFQE 432


>SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 341

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 261 GGRAQKPLPPFRHQGLTELLAAQRDLLLHQ 350
           GG +   + P   QG  EL   +RD L+H+
Sbjct: 203 GGHSGATIVPLLSQGGVELTGEKRDALIHR 232


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 19/47 (40%), Positives = 24/47 (51%)
 Frame = -3

Query: 529 NCRSLFSGKTY*ALTSLAFDQVTAPFPLSLKWLATLGQVCKTHSRHY 389
           NCRS+FSG     ++S+ FD   A F  +L    TL  V K H   Y
Sbjct: 430 NCRSIFSGDRNFIVSSI-FD--NANFDRNLIVDLTLSFVLKLHPLEY 473


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,128,957
Number of Sequences: 5004
Number of extensions: 64225
Number of successful extensions: 174
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)