Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_K13
         (770 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   142   5e-35
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   140   3e-34
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    42   1e-04
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    28   1.3  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   5.2  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  142 bits (344), Expect = 5e-35
 Identities = 77/148 (52%), Positives = 92/148 (62%), Gaps = 1/148 (0%)
 Frame = -2

Query: 766 PXXXFVIXSRPFGQXAVXKLPRTPVXRXLRDVHTRC-FTNQIQAAFREPRLLIVLDPAQD 590
           P    VI SRP+G  AV K         +    T   FTN I   +REPRL+IV DP  D
Sbjct: 74  PADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTDPRAD 133

Query: 589 HQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLP 410
            Q I EAS+VNIPVIALC+TDS L  VD+AIP N K   SIGL W+LLAREVLRLRG + 
Sbjct: 134 AQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNIS 193

Query: 409 RDQRWDVVVDLFFXP*PXEESEKDEQQA 326
           R   W+V+ DL+F   P E   ++EQ+A
Sbjct: 194 RTTAWEVMPDLYFYRDPEEIEREEEQKA 221


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  140 bits (338), Expect = 3e-34
 Identities = 76/149 (51%), Positives = 93/149 (62%), Gaps = 1/149 (0%)
 Frame = -2

Query: 766 PXXXFVIXSRPFGQXAVXKLPRTPVXRXLRDVHTRC-FTNQIQAAFREPRLLIVLDPAQD 590
           P    V+ +R +G  AV K         +    T   FTN I   +REPRL++V DP  D
Sbjct: 73  PADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVTDPRAD 132

Query: 589 HQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLP 410
            Q I EAS+VNIPVIALC+TDS L  VDIAIP N K   SIGL+W+LLAREVLR+RG L 
Sbjct: 133 AQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLS 192

Query: 409 RDQRWDVVVDLFFXP*PXEESEKDEQQAK 323
           R   WDV+ DL+F   P EE E++E+  K
Sbjct: 193 RSAPWDVMPDLYFYRDP-EEVEREEEAKK 220


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 20/62 (32%), Positives = 33/62 (53%)
 Frame = -2

Query: 625 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLL 446
           P L+++L+P ++     EA   ++P I + +TD+  R V   IP N  S     L+  LL
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLL 239

Query: 445 AR 440
           +R
Sbjct: 240 SR 241


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 577 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 467
           T A    +  + LC+ +S  RF D+A+  NTK +H I
Sbjct: 75  TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 469 IGLMWWLLAREVLRLRGVLPRDQRWD 392
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,758,324
Number of Sequences: 5004
Number of extensions: 52825
Number of successful extensions: 131
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)