Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_K13
         (770 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...   154   6e-38
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...   152   3e-37
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902     29   3.1  
02_04_0352 + 22278514-22278721,22278871-22279136,22279228-22279833     29   4.1  
06_03_0543 + 21967787-21970261                                         29   5.4  
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423     28   7.2  
10_08_0134 + 15107411-15107939,15108049-15108124,15108332-151084...    28   9.5  

>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score =  154 bits (374), Expect = 6e-38
 Identities = 74/148 (50%), Positives = 97/148 (65%), Gaps = 1/148 (0%)
 Frame = -2

Query: 766 PXXXFVIXSRPFGQXAVXKLPRTPVXRXLRDVHTR-CFTNQIQAAFREPRLLIVLDPAQD 590
           P    V  +RP+GQ AV K  +      +   HT   FTNQ+Q +F EPRLLI+ DP  D
Sbjct: 75  PQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTD 134

Query: 589 HQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLP 410
           HQPI E++  NIP IA C+TDSP+R+VDI IP N K   SIG ++WLLAR VL++RG + 
Sbjct: 135 HQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRGTIL 194

Query: 409 RDQRWDVVVDLFFXP*PXEESEKDEQQA 326
              +WDV+VDLFF   P E  E++E++A
Sbjct: 195 PGHKWDVMVDLFFYRDPEEAKEQEEEEA 222


>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score =  152 bits (368), Expect = 3e-37
 Identities = 73/146 (50%), Positives = 96/146 (65%), Gaps = 1/146 (0%)
 Frame = -2

Query: 766 PXXXFVIXSRPFGQXAVXKLPRTPVXRXLRDVHTR-CFTNQIQAAFREPRLLIVLDPAQD 590
           P    V  +RP+GQ AV K  +      +   HT   FTNQ+Q +F EPRLLI+ DP  D
Sbjct: 75  PQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTD 134

Query: 589 HQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLP 410
           HQPI E++  NIP IA C+TDSP+R+VDI IP N K  +SIG ++WLLAR VL++RG + 
Sbjct: 135 HQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFWLLARMVLQMRGTIL 194

Query: 409 RDQRWDVVVDLFFXP*PXEESEKDEQ 332
              +WDV+VDLFF   P E  E++E+
Sbjct: 195 PGHKWDVMVDLFFYRDPEEAKEQEEE 220


>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
          Length = 781

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 209 TRCSSCFWSTPCSRRMVCPGTR*VEHN 129
           T C  C    P   + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301



 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -1

Query: 209 TRCSSCFWSTPCSRRMVCPGTR 144
           TRC  C    P   R  CPG+R
Sbjct: 81  TRCKECLARAPAGVRQECPGSR 102


>02_04_0352 + 22278514-22278721,22278871-22279136,22279228-22279833
          Length = 359

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -2

Query: 670 HTRCFTNQIQAAFRE-PRLLIVLDPAQDHQPITEAS 566
           H  CF+N ++  F + P LL   DPA DH  ++ AS
Sbjct: 245 HVTCFSNALEGQFLDTPYLLPAADPA-DHLAMSSAS 279


>06_03_0543 + 21967787-21970261
          Length = 824

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -2

Query: 463 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 374
           L W++L RE  +LRGV P +  ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501


>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
          Length = 427

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -1

Query: 209 TRCSSCFWSTPCSRRMVCPGTR*VEHN 129
           T+C  C    P     VCPG+R V  N
Sbjct: 93  TQCKECLAGAPAGITQVCPGSRTVNAN 119


>10_08_0134 +
           15107411-15107939,15108049-15108124,15108332-15108459,
           15108960-15109037,15109734-15110263
          Length = 446

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/52 (30%), Positives = 21/52 (40%)
 Frame = -3

Query: 453 GCWHVKC*GFVVCFPVTSAGMLWLICSSXRDPLKKVKRMNNKPRNRLWYQLN 298
           G WH K   ++  + V  AG  W + S        V   +N PR  L Y  N
Sbjct: 252 GIWHTKRKSYLKPYLVNGAGSAWTMMSRQFAEYFTVGYDDNLPRTLLLYYTN 303


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,905,674
Number of Sequences: 37544
Number of extensions: 376707
Number of successful extensions: 999
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)