Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_T7_K12
(774 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0544 - 23768808-23768910,23769005-23769030,23769379-237694... 31 0.77
10_08_0973 - 21963754-21963936,21964089-21964383,21964504-219646... 30 1.8
01_05_0440 + 22203688-22203832,22203912-22204078 29 3.1
09_02_0618 + 11267444-11267652,11268345-11268399,11269554-11270138 29 4.1
10_08_0971 - 21949721-21949936,21950051-21950484,21950599-219507... 29 5.4
05_02_0122 - 6840840-6841307 29 5.4
07_01_0130 - 963856-965454 28 7.2
06_03_0854 + 25400855-25403741,25406174-25407708 28 7.2
05_01_0051 - 345125-345693,345833-346925 28 7.2
>02_04_0544 -
23768808-23768910,23769005-23769030,23769379-23769497,
23769542-23769668,23769842-23769905,23769981-23770095,
23770867-23771101,23771196-23771382,23771948-23772305,
23772432-23772465
Length = 455
Score = 31.5 bits (68), Expect = 0.77
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +3
Query: 96 PTTPTAVKPPRVGPKTSLNHSIGSSDG-RCVQRAGT*STRAYDSRLLGIPR 245
P PT PP PKT+ + + SSDG R + + S YD R L + R
Sbjct: 24 PPYPTGSAPPVRLPKTACSATYFSSDGSRLLATVASASATVYDCRTLSVVR 74
>10_08_0973 -
21963754-21963936,21964089-21964383,21964504-21964616,
21964729-21964913,21965054-21965201,21965297-21965575,
21965657-21965761,21965936-21966178,21966426-21966486,
21966734-21966792
Length = 556
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Frame = +3
Query: 696 PFRQFL*VSA-LQPYSPGXQNFWFP 767
P R+ L VS +QPY+P +NFW+P
Sbjct: 213 PPRRSLNVSGPVQPYNPSLKNFWYP 237
>01_05_0440 + 22203688-22203832,22203912-22204078
Length = 103
Score = 29.5 bits (63), Expect = 3.1
Identities = 27/64 (42%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Frame = -2
Query: 701 EGHHPGVEPAA*FDSTRXSHQA---RTPEGLTD*QLFL--DSVGGGAXPFLVGGAICLVN 537
EGH GV+ AA +T S A R GL D L L ++ GGGA L GG+ L N
Sbjct: 11 EGH--GVDAAAGRAATGLSVDAAVGRAVAGLADGVLGLMYEAQGGGAGEELTGGSDGLAN 68
Query: 536 SGNE 525
G E
Sbjct: 69 DGEE 72
>09_02_0618 + 11267444-11267652,11268345-11268399,11269554-11270138
Length = 282
Score = 29.1 bits (62), Expect = 4.1
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = -3
Query: 295 LKLLR--AGDWGLQLSPIXRGIPSKRES*ARVDYVPALCTHRPSLLPIE*FSEVFGPT 128
++LLR A D G++ P+ KR+S A Y P C H ++ I S+ FG T
Sbjct: 112 MRLLRFMASDLGVEQEPLLAAFRGKRQSTALHHYPP--CRHPEKVIGIAPHSDGFGLT 167
>10_08_0971 -
21949721-21949936,21950051-21950484,21950599-21950791,
21950909-21951007,21951114-21951191,21951275-21951669,
21954317-21954482,21954840-21954927,21955015-21955127,
21955242-21955426,21955840-21955987,21956071-21956349,
21956425-21956529,21956892-21957137,21957367-21957408,
21957539-21957613
Length = 953
Score = 28.7 bits (61), Expect = 5.4
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +3
Query: 726 LQPYSPGXQNFWFP 767
+QPY+P +NFW+P
Sbjct: 224 VQPYNPNLKNFWYP 237
>05_02_0122 - 6840840-6841307
Length = 155
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 159 IGSSDGRCVQRAGT*STRAYDSRLLGIPRFMG 254
+G+ G C + ++R Y S L+G+PR +G
Sbjct: 109 VGAGGGGCTSSRASITSRVYFSGLIGLPRSIG 140
>07_01_0130 - 963856-965454
Length = 532
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +2
Query: 557 HQLRTXMHHHPPNQERAVNLSILPVSGPGEIXVLSQIK 670
H + + PPN NL +LP+ GP ++ + +K
Sbjct: 195 HIINFLLRPEPPNTLSVDNLGVLPIIGPAKVGKSTLVK 232
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 28.3 bits (60), Expect = 7.2
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +3
Query: 267 PQSPARRSFSGLPGPLGQGRTC*FLQX*RACGPGHLRASQT-CYCSISCGSKTPVP 431
P +PA S S LG+GR C + A G GH R S+T C ++ P P
Sbjct: 1069 PATPATLSASSREHGLGRGRGC--VAIANAAGRGHGRGSETKCAPTVVIVGAPPPP 1122
>05_01_0051 - 345125-345693,345833-346925
Length = 553
Score = 28.3 bits (60), Expect = 7.2
Identities = 20/65 (30%), Positives = 28/65 (43%)
Frame = +2
Query: 557 HQLRTXMHHHPPNQERAVNLSILPVSGPGEIXVLSQIKPQAPLLGGALPSIPLSFSFATI 736
H LR +HH PP + L P + + + A LL P+ P FSF T+
Sbjct: 78 HLLRLLLHHLPPPLPLFSLDNALRALAP-RLPFSALLSLFAALLRSHHPAFPARFSFPTL 136
Query: 737 LPRXS 751
L + S
Sbjct: 137 LSKAS 141
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,642,959
Number of Sequences: 37544
Number of extensions: 507600
Number of successful extensions: 1142
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1094
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1142
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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