Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_T7_K12
(774 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X05562-1|CAA29076.1| 1043|Homo sapiens protein ( Human mRNA for ... 31 6.1
AL161773-3|CAH71366.2| 1712|Homo sapiens collagen type IV alpha ... 31 6.1
AL159153-1|CAH72050.2| 1712|Homo sapiens collagen type IV alpha ... 31 6.1
AL139385-2|CAI17005.2| 1712|Homo sapiens collagen type IV alpha ... 31 6.1
CR456504-1|CAG30390.1| 601|Homo sapiens HMG2L1 protein. 30 8.0
BC111373-1|AAI11374.1| 395|Homo sapiens HMG2L1 protein protein. 30 8.0
BC104756-1|AAI04757.1| 492|Homo sapiens HMG2L1 protein protein. 30 8.0
BC104754-1|AAI04755.1| 492|Homo sapiens HMG2L1 protein protein. 30 8.0
BC062413-1|AAH62413.1| 394|Homo sapiens HMG2L1 protein protein. 30 8.0
BC052624-1|AAH52624.1| 393|Homo sapiens HMG2L1 protein protein. 30 8.0
BC025303-1|AAH25303.1| 394|Homo sapiens HMG2L1 protein protein. 30 8.0
BC017326-1|AAH17326.1| 284|Homo sapiens HMG2L1 protein protein. 30 8.0
BC004194-1|AAH04194.1| 284|Homo sapiens HMG2L1 protein protein. 30 8.0
AL079310-1|CAB45240.1| 492|Homo sapiens hypothetical protein pr... 30 8.0
AL008635-1|CAI21632.1| 601|Homo sapiens high-mobility group pro... 30 8.0
AJ010070-1|CAA08992.1| 390|Homo sapiens protein ( Homo sapiens ... 30 8.0
>X05562-1|CAA29076.1| 1043|Homo sapiens protein ( Human mRNA for
alpha-2 chain of collagen IV N-terminus. ).
Length = 1043
Score = 30.7 bits (66), Expect = 6.1
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +3
Query: 234 GIPRFMGDNCKPQSPARRSFSGLPGPLGQG 323
G+P GD+ P F GLPGP G G
Sbjct: 566 GVPGMKGDDGSPGRDGLDGFPGLPGPPGDG 595
>AL161773-3|CAH71366.2| 1712|Homo sapiens collagen type IV alpha 2
protein.
Length = 1712
Score = 30.7 bits (66), Expect = 6.1
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +3
Query: 234 GIPRFMGDNCKPQSPARRSFSGLPGPLGQG 323
G+P GD+ P F GLPGP G G
Sbjct: 566 GVPGMKGDDGSPGRDGLDGFPGLPGPPGDG 595
>AL159153-1|CAH72050.2| 1712|Homo sapiens collagen type IV alpha 2
protein.
Length = 1712
Score = 30.7 bits (66), Expect = 6.1
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +3
Query: 234 GIPRFMGDNCKPQSPARRSFSGLPGPLGQG 323
G+P GD+ P F GLPGP G G
Sbjct: 566 GVPGMKGDDGSPGRDGLDGFPGLPGPPGDG 595
>AL139385-2|CAI17005.2| 1712|Homo sapiens collagen type IV alpha 2
protein.
Length = 1712
Score = 30.7 bits (66), Expect = 6.1
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +3
Query: 234 GIPRFMGDNCKPQSPARRSFSGLPGPLGQG 323
G+P GD+ P F GLPGP G G
Sbjct: 566 GVPGMKGDDGSPGRDGLDGFPGLPGPPGDG 595
>CR456504-1|CAG30390.1| 601|Homo sapiens HMG2L1 protein.
Length = 601
Score = 30.3 bits (65), Expect = 8.0
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 599 ERAVNLSILPVSGPGEIXVLSQIKPQAPLLGGALPSIPL 715
+R++ LS +PV GE+ V S P P G A P +PL
Sbjct: 343 KRSLGLSAVPV---GEVTVTSGPPPSIPYAGAAAPPLPL 378
>BC111373-1|AAI11374.1| 395|Homo sapiens HMG2L1 protein protein.
Length = 395
Score = 30.3 bits (65), Expect = 8.0
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 599 ERAVNLSILPVSGPGEIXVLSQIKPQAPLLGGALPSIPL 715
+R++ LS +PV GE+ V S P P G A P +PL
Sbjct: 343 KRSLGLSAVPV---GEVTVTSGPPPSIPYAGAAAPPLPL 378
>BC104756-1|AAI04757.1| 492|Homo sapiens HMG2L1 protein protein.
Length = 492
Score = 30.3 bits (65), Expect = 8.0
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 599 ERAVNLSILPVSGPGEIXVLSQIKPQAPLLGGALPSIPL 715
+R++ LS +PV GE+ V S P P G A P +PL
Sbjct: 234 KRSLGLSAVPV---GEVTVTSGPPPSIPYAGAAAPPLPL 269
>BC104754-1|AAI04755.1| 492|Homo sapiens HMG2L1 protein protein.
Length = 492
Score = 30.3 bits (65), Expect = 8.0
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 599 ERAVNLSILPVSGPGEIXVLSQIKPQAPLLGGALPSIPL 715
+R++ LS +PV GE+ V S P P G A P +PL
Sbjct: 234 KRSLGLSAVPV---GEVTVTSGPPPSIPYAGAAAPPLPL 269
>BC062413-1|AAH62413.1| 394|Homo sapiens HMG2L1 protein protein.
Length = 394
Score = 30.3 bits (65), Expect = 8.0
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 599 ERAVNLSILPVSGPGEIXVLSQIKPQAPLLGGALPSIPL 715
+R++ LS +PV GE+ V S P P G A P +PL
Sbjct: 343 KRSLGLSAVPV---GEVTVTSGPPPSIPYAGAAAPPLPL 378
>BC052624-1|AAH52624.1| 393|Homo sapiens HMG2L1 protein protein.
Length = 393
Score = 30.3 bits (65), Expect = 8.0
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 599 ERAVNLSILPVSGPGEIXVLSQIKPQAPLLGGALPSIPL 715
+R++ LS +PV GE+ V S P P G A P +PL
Sbjct: 343 KRSLGLSAVPV---GEVTVTSGPPPSIPYAGAAAPPLPL 378
>BC025303-1|AAH25303.1| 394|Homo sapiens HMG2L1 protein protein.
Length = 394
Score = 30.3 bits (65), Expect = 8.0
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 599 ERAVNLSILPVSGPGEIXVLSQIKPQAPLLGGALPSIPL 715
+R++ LS +PV GE+ V S P P G A P +PL
Sbjct: 343 KRSLGLSAVPV---GEVTVTSGPPPSIPYAGAAAPPLPL 378
>BC017326-1|AAH17326.1| 284|Homo sapiens HMG2L1 protein protein.
Length = 284
Score = 30.3 bits (65), Expect = 8.0
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 599 ERAVNLSILPVSGPGEIXVLSQIKPQAPLLGGALPSIPL 715
+R++ LS +PV GE+ V S P P G A P +PL
Sbjct: 234 KRSLGLSAVPV---GEVTVTSGPPPSIPYAGAAAPPLPL 269
>BC004194-1|AAH04194.1| 284|Homo sapiens HMG2L1 protein protein.
Length = 284
Score = 30.3 bits (65), Expect = 8.0
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 599 ERAVNLSILPVSGPGEIXVLSQIKPQAPLLGGALPSIPL 715
+R++ LS +PV GE+ V S P P G A P +PL
Sbjct: 234 KRSLGLSAVPV---GEVTVTSGPPPSIPYAGAAAPPLPL 269
>AL079310-1|CAB45240.1| 492|Homo sapiens hypothetical protein
protein.
Length = 492
Score = 30.3 bits (65), Expect = 8.0
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 599 ERAVNLSILPVSGPGEIXVLSQIKPQAPLLGGALPSIPL 715
+R++ LS +PV GE+ V S P P G A P +PL
Sbjct: 234 KRSLGLSAVPV---GEVTVTSGPPPSIPYAGAAAPPLPL 269
>AL008635-1|CAI21632.1| 601|Homo sapiens high-mobility group
protein 2-like 1 protein.
Length = 601
Score = 30.3 bits (65), Expect = 8.0
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 599 ERAVNLSILPVSGPGEIXVLSQIKPQAPLLGGALPSIPL 715
+R++ LS +PV GE+ V S P P G A P +PL
Sbjct: 343 KRSLGLSAVPV---GEVTVTSGPPPSIPYAGAAAPPLPL 378
>AJ010070-1|CAA08992.1| 390|Homo sapiens protein ( Homo sapiens
mRNA encompasing THC211630. ).
Length = 390
Score = 30.3 bits (65), Expect = 8.0
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 599 ERAVNLSILPVSGPGEIXVLSQIKPQAPLLGGALPSIPL 715
+R++ LS +PV GE+ V S P P G A P +PL
Sbjct: 343 KRSLGLSAVPV---GEVTVTSGPPPSIPYAGAAAPPLPL 378
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,301,624
Number of Sequences: 237096
Number of extensions: 2821558
Number of successful extensions: 6167
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 5070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6156
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9367263024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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