Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_K12
         (774 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   7.3  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         21   9.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.6  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -2

Query: 710 ELTEGHHPGVEPAA*FDSTRXSHQARTPEGLTD 612
           EL++ HHP  +       T  S  A   EGL D
Sbjct: 396 ELSDLHHPNCKINRKVHHTTSSSSAAGGEGLAD 428


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -2

Query: 380 CP*MSWAARALXLKESACS 324
           C  +SW ++ L +  SAC+
Sbjct: 64  CDVLSWQSKWLSINHSACA 82


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 704  TEGHHPGVEPAA*F 663
            T+G  PG+ PAA F
Sbjct: 1494 TQGQAPGIPPAATF 1507


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 704  TEGHHPGVEPAA*F 663
            T+G  PG+ PAA F
Sbjct: 1490 TQGQAPGIPPAATF 1503


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,718
Number of Sequences: 438
Number of extensions: 4605
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)