Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_K07
         (774 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   4.2  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   7.3  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   7.3  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   7.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.6  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/22 (40%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -3

Query: 280 PESTSSIPLATFQLLPLIP-YC 218
           P++T+S  +    +LP+IP YC
Sbjct: 774 PQNTNSQAIPRIPILPMIPVYC 795


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 528 PSSLGMXKGVSPPHFQVNDESQASRLIS 445
           P+S+G+   VS P F+V    Q +  IS
Sbjct: 174 PNSVGVSNEVSLPQFKVLGHRQRAMEIS 201


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -1

Query: 684 GYINPIINPRFHTPTTPD 631
           GY+N  +NP  +T   P+
Sbjct: 666 GYMNSFVNPVIYTVFNPE 683


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 528 PSSLGMXKGVSPPHFQVNDESQASRLIS 445
           P+S+G+   VS P F+V    Q +  IS
Sbjct: 113 PNSVGVSNEVSLPQFKVLGHRQRAMEIS 140


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = -1

Query: 498 SPPHFQVNDESQASR 454
           +PPHF++  ++Q +R
Sbjct: 775 APPHFEIKLKNQTAR 789


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,096
Number of Sequences: 438
Number of extensions: 4457
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)