Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_K05
         (833 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   149   4e-37
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   148   1e-36
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    40   6e-04
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    28   1.4  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   5.7  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    26   7.6  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  149 bits (362), Expect = 4e-37
 Identities = 72/118 (61%), Positives = 85/118 (72%)
 Frame = -2

Query: 685 AYCGTFHTRCFTNQIQAAFREXRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFV 506
           A  G F    FTN I   +RE RL++V DP  D Q I EAS+VNIPVIALC+TDS L  V
Sbjct: 100 AIAGRFTPGNFTNYITRTYREPRLIVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHV 159

Query: 505 DIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQ 332
           DIAIP N K   SIGL+W+LLAREVLR+RG L R   WDV+ DL+FYRDPEE E++E+
Sbjct: 160 DIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPWDVMPDLYFYRDPEEVEREEE 217



 Score = 51.2 bits (117), Expect = 2e-07
 Identities = 28/56 (50%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
 Frame = -3

Query: 822 LXXXWEKXFWLXXLXSHRE-PR*CVVXSSRPFGQRAVXKFPAHTGXTXIAGRFTPG 658
           L   WEK      + +  E P    V S+R +G RAV KF AHTG T IAGRFTPG
Sbjct: 53  LGKTWEKLVLAARVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPG 108


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  148 bits (358), Expect = 1e-36
 Identities = 72/119 (60%), Positives = 85/119 (71%)
 Frame = -2

Query: 685 AYCGTFHTRCFTNQIQAAFREXRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFV 506
           A  G F    FTN I   +RE RL+IV DP  D Q I EAS+VNIPVIALC+TDS L  V
Sbjct: 101 AIAGRFTPGNFTNYITRTYREPRLIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHV 160

Query: 505 DIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 329
           D+AIP N K   SIGL W+LLAREVLRLRG + R   W+V+ DL+FYRDPEE E++E+Q
Sbjct: 161 DVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTTAWEVMPDLYFYRDPEEIEREEEQ 219



 Score = 55.6 bits (128), Expect = 8e-09
 Identities = 30/56 (53%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
 Frame = -3

Query: 822 LXXXWEKXFWLXXLXSHRE-PR*CVVXSSRPFGQRAVXKFPAHTGXTXIAGRFTPG 658
           L   WEK      + +  E P    V SSRP+G RAV KF AHTG T IAGRFTPG
Sbjct: 54  LGKTWEKLVLAARVIATIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPG 109


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 39.5 bits (88), Expect = 6e-04
 Identities = 19/60 (31%), Positives = 32/60 (53%)
 Frame = -2

Query: 616 LLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 437
           L+++L+P ++     EA   ++P I + +TD+  R V   IP N  S     L+  LL+R
Sbjct: 182 LMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLLSR 241


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 574 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 464
           T A    +  + LC+ +S  RF D+A+  NTK +H I
Sbjct: 75  TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 466 IGLMWWLLAREVLRLRGVLPRDQRWD 389
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -3

Query: 411 FPVTSAGML--WLICSSTVTLKKVKRM 337
           FP  S  ++  WL   +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,071,459
Number of Sequences: 5004
Number of extensions: 59754
Number of successful extensions: 154
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)