Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_K04
         (833 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   111   2e-25
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   107   3e-24
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    31   0.27 
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    28   1.4  
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch...    28   1.9  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   5.7  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  111 bits (266), Expect = 2e-25
 Identities = 52/74 (70%), Positives = 59/74 (79%)
 Frame = -2

Query: 583 ITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQ 404
           I EAS+VNIPVIALC+TDS L  VDIAIP N K   SIGL+W+LLAREVLR+RG L R  
Sbjct: 136 IKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSA 195

Query: 403 RWDVVVDLFFYRDP 362
            WDV+ DL+FYRDP
Sbjct: 196 PWDVMPDLYFYRDP 209



 Score = 60.9 bits (141), Expect = 2e-10
 Identities = 30/58 (51%), Positives = 33/58 (56%)
 Frame = -1

Query: 761 CXFXTALSVXRXVLKXPAXPGVTPIXGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQ 588
           C   T     R VLK  A  G T I GRFTPG FTN I   +REPRL++V DP  D Q
Sbjct: 77  CVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVTDPRADAQ 134


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  107 bits (256), Expect = 3e-24
 Identities = 50/74 (67%), Positives = 58/74 (78%)
 Frame = -2

Query: 583 ITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQ 404
           I EAS+VNIPVIALC+TDS L  VD+AIP N K   SIGL W+LLAREVLRLRG + R  
Sbjct: 137 IKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTT 196

Query: 403 RWDVVVDLFFYRDP 362
            W+V+ DL+FYRDP
Sbjct: 197 AWEVMPDLYFYRDP 210



 Score = 60.1 bits (139), Expect = 4e-10
 Identities = 29/48 (60%), Positives = 31/48 (64%)
 Frame = -1

Query: 731 RXVLKXPAXPGVTPIXGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQ 588
           R VLK  A  G T I GRFTPG FTN I   +REPRL+IV DP  D Q
Sbjct: 88  RAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTDPRADAQ 135


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 30.7 bits (66), Expect = 0.27
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -2

Query: 577 EASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 443
           EA   ++P I + +TD+  R V   IP N  S     L+  LL+R
Sbjct: 197 EAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLLSR 241


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 580 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 470
           T A    +  + LC+ +S  RF D+A+  NTK +H I
Sbjct: 75  TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110


>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 611

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -3

Query: 426 VVCFPVTSAGMLWLICSSTVTPEESEKD 343
           V+ FP TS+G   LI S +  PEE  KD
Sbjct: 571 VIAFPKTSSGADLLIGSPSAIPEEMLKD 598


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 472 IGLMWWLLAREVLRLRGVLPRDQRWD 395
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,751,169
Number of Sequences: 5004
Number of extensions: 50497
Number of successful extensions: 136
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)