Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_J13
         (936 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    30   0.41 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   5.0  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   6.6  
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce...    26   8.8  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 30.3 bits (65), Expect = 0.41
 Identities = 21/87 (24%), Positives = 25/87 (28%), Gaps = 1/87 (1%)
 Frame = +2

Query: 410  STLPXXXXXXXXPXXPPPXKTPXXXAPALXXPXSXPXXXXXTXXXXXPXP-XAPXXXPXX 586
            ST P        P  PPP   P    P++  P   P     +     P P  A    P  
Sbjct: 1048 STPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKP 1107

Query: 587  XXAXXXXXGXPXXPPXMEXXVXXXPPP 667
              A          PP  +  V   P P
Sbjct: 1108 SVAVPPVPAPSGAPPVPKPSVAAPPVP 1134


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 26/99 (26%), Positives = 29/99 (29%)
 Frame = +2

Query: 371 PXRXPPXIXSXARSTLPXXXXXXXXPXXPPPXKTPXXXAPALXXPXSXPXXXXXTXXXXX 550
           P   PP I   +   LP            PP  TP    P+   P S P     +     
Sbjct: 388 PPAPPPAIPGRSAPALPPLGNASRTST--PPVPTPPSLPPSA--PPSLPPSAPPSLPMGA 443

Query: 551 PXPXAPXXXPXXXXAXXXXXGXPXXPPXMEXXVXXXPPP 667
           P   AP   P    A     G P  PP         PPP
Sbjct: 444 PA--APPLPPSAPIAPPLPAGMPAAPPL--PPAAPAPPP 478


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -3

Query: 361 TQLPPRATPAAPERSSPTSVILVTSL 284
           + LPP A PAAP +S P++  L +++
Sbjct: 169 SSLPPPAQPAAPVKSPPSAPSLPSAV 194


>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 413

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 352 PPRATPAAPERSSPTSVILVTSLH 281
           P  +  AAP  SSPTS  L T+ H
Sbjct: 81  PWHSNSAAPASSSPTSATLSTAAH 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,483,784
Number of Sequences: 5004
Number of extensions: 14142
Number of successful extensions: 48
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 475330268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)