Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_J05
         (789 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    23   4.3  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   4.3  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    22   7.5  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    22   7.5  
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    22   7.5  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    22   7.5  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   7.5  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    22   7.5  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    22   7.5  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    22   7.5  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    22   7.5  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    22   7.5  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    22   7.5  
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    22   7.5  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    22   7.5  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   7.5  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   7.5  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    22   7.5  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   7.5  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    22   7.5  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   9.9  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   9.9  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   9.9  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   9.9  

>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 727 SRPYASSHXPLRXRXHQPDHQIPRF 653
           S+ YA+S   LR R H   H   R+
Sbjct: 207 SKKYATSSNSLRNRTHDFQHTSSRY 231


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 727 SRPYASSHXPLRXRXHQPDHQIPRF 653
           S+ YA+S   LR R H   H   R+
Sbjct: 207 SKKYATSSNSLRSRTHDFQHTSSRY 231


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 727 SRPYASSHXPLRXRXHQPDHQIPRF 653
           S+ YA+S   LR R H   H   R+
Sbjct: 196 SKKYATSSNSLRSRTHGFQHTSSRY 220


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 727 SRPYASSHXPLRXRXHQPDHQIPRF 653
           S+ YA+S   LR R H   H   R+
Sbjct: 196 SKKYATSSNSLRSRTHGFQHTSSRY 220


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 727 SRPYASSHXPLRXRXHQPDHQIPRF 653
           S+ YA+S   LR R H   H   R+
Sbjct: 207 SKKYATSSNSLRSRTHGFQHTSSRY 231


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 727 SRPYASSHXPLRXRXHQPDHQIPRF 653
           S+ YA+S   LR R H   H   R+
Sbjct: 207 SKKYATSSNSLRSRTHGFQHTSSRY 231


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 727 SRPYASSHXPLRXRXHQPDHQIPRF 653
           S+ YA+S   LR R H   H   R+
Sbjct: 207 SKKYATSSNSLRSRTHGFQHTSSRY 231


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 727 SRPYASSHXPLRXRXHQPDHQIPRF 653
           S+ YA+S   LR R H   H   R+
Sbjct: 196 SKKYATSSNSLRNRTHGFQHTSSRY 220


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 727 SRPYASSHXPLRXRXHQPDHQIPRF 653
           S+ YA+S   LR R H   H   R+
Sbjct: 207 SKKYATSSNSLRNRTHGFQHTSSRY 231


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 727 SRPYASSHXPLRXRXHQPDHQIPRF 653
           S+ YA+S   LR R H   H   R+
Sbjct: 207 SKKYATSSNSLRNRTHGFQHTSSRY 231


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 727 SRPYASSHXPLRXRXHQPDHQIPRF 653
           S+ YA+S   LR R H   H   R+
Sbjct: 196 SKKYATSSNSLRNRTHGFQHTSSRY 220


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 727 SRPYASSHXPLRXRXHQPDHQIPRF 653
           S+ YA+S   LR R H   H   R+
Sbjct: 207 SKKYATSSNSLRSRTHGFQHTSSRY 231


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 727 SRPYASSHXPLRXRXHQPDHQIPRF 653
           S+ YA+S   LR R H   H   R+
Sbjct: 207 SKKYATSSNSLRNRTHGFQHTSSRY 231


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 727 SRPYASSHXPLRXRXHQPDHQIPRF 653
           S+ YA+S   LR R H   H   R+
Sbjct: 207 SKKYATSSNSLRSRTHGFQHTSSRY 231


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 727 SRPYASSHXPLRXRXHQPDHQIPRF 653
           S+ YA+S   LR R H   H   R+
Sbjct: 207 SKKYATSSNSLRSRTHGFQHTSSRY 231


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 727 SRPYASSHXPLRXRXHQPDHQIPRF 653
           S+ YA+S   LR R H   H   R+
Sbjct: 196 SKKYATSSNSLRNRTHGFQHTSSRY 220


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 727 SRPYASSHXPLRXRXHQPDHQIPRF 653
           S+ YA+S   LR R H   H   R+
Sbjct: 212 SKKYATSSNSLRNRTHGFQHTSSRY 236


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 727 SRPYASSHXPLRXRXHQPDHQIPRF 653
           S+ YA+S   LR R H   H   R+
Sbjct: 207 SKKYATSSNSLRNRTHGFQHTSSRY 231


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 727 SRPYASSHXPLRXRXHQPDHQIPRF 653
           S+ YA+S   LR R H   H   R+
Sbjct: 207 SKKYATSSNSLRSRTHGFQHTSSRY 231


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 727 SRPYASSHXPLRXRXHQPDHQIPRF 653
           S+ YA+S   LR R H   H   R+
Sbjct: 207 SKKYATSSNSLRNRTHGFQHTSSRY 231


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = +1

Query: 622 WMLSLGWLVYGIGGFDDRVDVXXIAGXG 705
           W+ SLGW +  + G++  V    +   G
Sbjct: 176 WLFSLGWTIAPMFGWNRYVPEGNMTACG 203


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 529 PSSLGMXKGVSPPYFQVNDESQASRLIS 446
           P+S+G+   VS P F+V    Q +  IS
Sbjct: 174 PNSVGVSNEVSLPQFKVLGHRQRAMEIS 201


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 529 PSSLGMXKGVSPPYFQVNDESQASRLIS 446
           P+S+G+   VS P F+V    Q +  IS
Sbjct: 113 PNSVGVSNEVSLPQFKVLGHRQRAMEIS 140


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = +1

Query: 622 WMLSLGWLVYGIGGFDDRVDVXXIAGXG 705
           W+ SLGW +  + G++  V    +   G
Sbjct: 52  WLFSLGWTIAPMFGWNRYVPEGNMTACG 79


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,981
Number of Sequences: 438
Number of extensions: 4494
Number of successful extensions: 28
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)