Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_T7_J04
(778 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 29 0.98
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 29 0.98
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 28 1.7
SPBC16H5.06 |rip1||ubiquinol-cytochrome-c reductase complex subu... 27 3.0
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 5.2
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 5.2
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac... 26 6.9
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 6.9
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 26 6.9
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 26 6.9
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ... 25 9.2
SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 9.2
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 25 9.2
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 28.7 bits (61), Expect = 0.98
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Frame = +1
Query: 310 PPSPAPTPMLRWAGSATGDFFPLSSPRLVRGAPEP--QRTTTPQDLSAEHRAPPXPSNRR 483
P SP P + A T PL+ P + +P Q+TT+P S+ PP P +
Sbjct: 194 PSSPNPAEHMTGAYVNT----PLNQPPSYAASTQPEFQQTTSPIFSSSSTPPPPPPRPSQ 249
Query: 484 PLAGAGWGLSARTTRSA 534
P +G + R SA
Sbjct: 250 PTSGESQNTNPRFPFSA 266
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 28.7 bits (61), Expect = 0.98
Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Frame = +1
Query: 307 GPPSPAPTPMLRWAGSATGDFFPLSSPRLVRGAPEPQRTT---------TPQDLSAEHRA 459
GPPS APT L AG G +P + P + T P +++ +
Sbjct: 1894 GPPSAAPTSALPPAGPPAGATAISGNPGMPAPVPLTGKETAVPLSSMPNAPPSVASNAKL 1953
Query: 460 PPXPSNRR--PLAGAGWGLSARTTRSA 534
PP +NR+ PL + TTR A
Sbjct: 1954 PPASNNRKVDPLEDILQAMPPPTTRKA 1980
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/47 (25%), Positives = 20/47 (42%)
Frame = -2
Query: 744 NQGXRTSXHPRPHPFAADRSQLGETTTPMDVQPPSGTRKTRGFMKNP 604
N + H R HPF++D + T ++ + + RGF P
Sbjct: 394 NSPSHNNIHSRQHPFSSDEDEGNIVTNGTGLRSSQSSSQNRGFDLEP 440
>SPBC16H5.06 |rip1||ubiquinol-cytochrome-c reductase complex subunit
5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 228
Score = 27.1 bits (57), Expect = 3.0
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -2
Query: 126 RLLPLSSTGGAESDITRSDPRRQGIRKE*DSPSIP 22
RLLP+SST + + P+ IR DSP +P
Sbjct: 17 RLLPVSSTASSLKGSMMTIPKFTSIRTYTDSPEMP 51
>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 682
Score = 26.2 bits (55), Expect = 5.2
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +2
Query: 365 TSSPSHLHDS*GAHQSH-SAPPPHRTLVPSTGRPRHPA 475
+SS SHL D H H S+ PPH + PST H A
Sbjct: 171 SSSSSHL-DMGAIHPPHHSSLPPHMGVDPSTMADAHNA 207
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 26.2 bits (55), Expect = 5.2
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +1
Query: 310 PPSPAPTPMLRWAGSATGDFFPLSSPRLVRGAPEPQRTTTP 432
PP PAP R A + + +SSP V P QR T P
Sbjct: 222 PPPPAPPKPRRLAARTSSNSSGVSSPTSV--PPPVQRNTRP 260
Score = 25.8 bits (54), Expect = 6.9
Identities = 19/64 (29%), Positives = 23/64 (35%)
Frame = +1
Query: 310 PPSPAPTPMLRWAGSATGDFFPLSSPRLVRGAPEPQRTTTPQDLSAEHRAPPXPSNRRPL 489
PP P LR GS+TG S+PR A Q + P + P P L
Sbjct: 60 PPPPKHASQLRAGGSSTG-----STPRTASPAVGNQDYSKPSYSQPSYSQPSQPPKEPAL 114
Query: 490 AGAG 501
G
Sbjct: 115 PSRG 118
>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
complex subunit, Fip1 homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 344
Score = 25.8 bits (54), Expect = 6.9
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 361 GDFFPLSSPRLVRGAPEPQRTTTPQDLSAEHRAP 462
G P + P++ + A E +TT PQDLS AP
Sbjct: 71 GSTRPSAKPQVEKTAVEV-KTTEPQDLSTAETAP 103
>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 25.8 bits (54), Expect = 6.9
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +2
Query: 164 ETTPLXKARWAKFSSRQTRPA*RLPTKPQRAPPLRLSGDP 283
+ TP+ KARW + +++ + + P +P LR S P
Sbjct: 459 QLTPIPKARWNQLANKHPSLSNSAASPPVSSPGLRRSHIP 498
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 25.8 bits (54), Expect = 6.9
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Frame = +1
Query: 277 RPRYRHVRAIGPPSPAPTPMLRWAGSATGDFFPLSSP---RLVRGAPEPQRTTTPQDLSA 447
R Y+ + +P LR S T + P+++ R RGA +TP+ + +
Sbjct: 86 RQNYQLAAKLSKKAPVDLHPLRPVRSQTPAYTPMTTRMMYRQTRGAQSEVNLSTPKQIYS 145
Query: 448 EHRAPPXPS 474
+H +PP S
Sbjct: 146 KH-SPPSTS 153
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 25.8 bits (54), Expect = 6.9
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 694 RPKSTRRDDDSDGRPASVGH 635
R K ++ D++SDG+ S GH
Sbjct: 824 RNKRSKNDEESDGKSLSAGH 843
>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +1
Query: 385 PRLVRGAPEPQRTTTPQDL-SAEHRAPPXPSNRRP 486
PR + G P PQ+ + + S+ + PP PS P
Sbjct: 101 PRKLPGVPAPQKQSEASSVNSSTEKLPPPPSYPGP 135
>SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 314
Score = 25.4 bits (53), Expect = 9.2
Identities = 16/59 (27%), Positives = 23/59 (38%)
Frame = -2
Query: 771 ARPVQXPRENQGXRTSXHPRPHPFAADRSQLGETTTPMDVQPPSGTRKTRGFMKNPGMP 595
AR + EN+ R + R FA MDVQ PS ++ ++N P
Sbjct: 104 ARSTRKDTENESLRKNNFKRRTQFAFTGRATKSNAGVMDVQSPSTMSTSKNNVRNAERP 162
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 25.4 bits (53), Expect = 9.2
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +2
Query: 269 LSGDPGTAMCAP*ARLRRLPPQCYVGRDLPPGTSSPS 379
L GD G ++ AP + +PP L GTS S
Sbjct: 479 LDGDTGVSIYAPGGAITSVPPYSLQNSQLMNGTSMSS 515
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,928,325
Number of Sequences: 5004
Number of extensions: 58507
Number of successful extensions: 160
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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