Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_J04
         (778 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    26   0.45 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.4  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   2.4  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    22   5.5  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    22   7.3  
AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    21   9.7  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   9.7  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 25.8 bits (54), Expect = 0.45
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 377 SHLHDS*GAHQSHSAPPPHRTLVP 448
           SH+H +   H SH+A P H+   P
Sbjct: 424 SHIHATPHHHHSHAATPHHQHSTP 447


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +1

Query: 400 GAPEPQRTTTPQDLSAEHRAPPXPSNRRPLAG 495
           GAP PQ +      + +  +PP PS   P  G
Sbjct: 19  GAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGG 50



 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = -2

Query: 513 RKPPPGSCQGPSIAGXRGRP 454
           R  PP   QGP   G  G P
Sbjct: 36  RGSPPNPSQGPPPGGPPGAP 55


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +1

Query: 346 AGSATGDFFPLSSPRLVRGAPEPQRTTTPQDLSAEHRAPPXPSN 477
           +G+A  D  P S+      A E + T+TP  LS     PP P +
Sbjct: 265 SGAAASDRPPASASSNEHEA-ESEHTSTPNFLSEAKIFPPTPGS 307


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 271 ERRPRYRHVRAIGPPSPAP 327
           E+ PR+R    IGPP+P P
Sbjct: 143 EQVPRFR---CIGPPTPFP 158


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 400 PSRVVEMRGGRSPRWQ 353
           P R +  RG ++PRW+
Sbjct: 305 PFRYLGARGKKNPRWE 320


>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +2

Query: 386 HDS*GAHQSHSAPPPHRTLVPSTGR 460
           HD      + ++ PP  T VP+T R
Sbjct: 78  HDDSDEEYAANSQPPRITSVPNTSR 102


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 373 PLSSPRLVRGAPEPQRTTTPQDLSA 447
           P SSPR +  A     +T+P+  S+
Sbjct: 823 PASSPRYLSAAATSSTSTSPRPASS 847


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,216
Number of Sequences: 438
Number of extensions: 5767
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)