Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_J03
         (791 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   178   6e-46
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   177   1e-45
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    40   5e-04
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    30   0.44 
SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces...    29   1.0  
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    28   1.3  
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch...    28   1.8  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   5.4  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  178 bits (434), Expect = 6e-46
 Identities = 87/132 (65%), Positives = 98/132 (74%)
 Frame = -2

Query: 751 VXSSRPFGQRAVXKFAAHTGXTXIAGRFTXRXFTNQIQAAFREXRLLIVLDPAQDHQPIT 572
           V SSRP+G RAV KFAAHTG T IAGRFT   FTN I   +RE RL+IV DP  D Q I 
Sbjct: 79  VISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTDPRADAQAIK 138

Query: 571 EASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRW 392
           EAS+VNIPVIALC+TDS L  VD+AIP N K   SIGL W+LLAREVLRLRG + R   W
Sbjct: 139 EASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTTAW 198

Query: 391 DVVVDLFFYRDP 356
           +V+ DL+FYRDP
Sbjct: 199 EVMPDLYFYRDP 210


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  177 bits (432), Expect = 1e-45
 Identities = 86/132 (65%), Positives = 98/132 (74%)
 Frame = -2

Query: 751 VXSSRPFGQRAVXKFAAHTGXTXIAGRFTXRXFTNQIQAAFREXRLLIVLDPAQDHQPIT 572
           V S+R +G RAV KFAAHTG T IAGRFT   FTN I   +RE RL++V DP  D Q I 
Sbjct: 78  VVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVTDPRADAQAIK 137

Query: 571 EASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRW 392
           EAS+VNIPVIALC+TDS L  VDIAIP N K   SIGL+W+LLAREVLR+RG L R   W
Sbjct: 138 EASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPW 197

Query: 391 DVVVDLFFYRDP 356
           DV+ DL+FYRDP
Sbjct: 198 DVMPDLYFYRDP 209


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 39.5 bits (88), Expect = 5e-04
 Identities = 19/60 (31%), Positives = 32/60 (53%)
 Frame = -2

Query: 616 LLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 437
           L+++L+P ++     EA   ++P I + +TD+  R V   IP N  S     L+  LL+R
Sbjct: 182 LMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLLSR 241


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +3

Query: 351 LQGSR*KNKSTTTSQRWSRG---STPRSLSTSRANNHHIKPIE 470
           L  S+  N+S+T +++ SR    ST RS STS AN H  K  E
Sbjct: 99  LTSSKAANRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKE 141


>SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 172

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +2

Query: 326 ACCSSFSLSSGVTVEEQINHNIPALVTGKHTTKPQHFTCQQ 448
           A   +  LSS VT   Q+ +N P   T K   K +HF  QQ
Sbjct: 28  ASIPNVELSSTVTSNSQVLNNDPLKETKKDKRKDRHFNWQQ 68


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 574 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 464
           T A    +  + LC+ +S  RF D+A+  NTK +H I
Sbjct: 75  TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110


>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 611

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -3

Query: 420 VVCFPVTSAGMLWLICSSTVTPEESEKD 337
           V+ FP TS+G   LI S +  PEE  KD
Sbjct: 571 VIAFPKTSSGADLLIGSPSAIPEEMLKD 598


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 466 IGLMWWLLAREVLRLRGVLPRDQRWD 389
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,890,302
Number of Sequences: 5004
Number of extensions: 54404
Number of successful extensions: 139
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)