Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_J02
         (890 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   107   3e-24
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   106   5e-24
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    27   2.7  
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch...    26   8.3  

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  107 bits (256), Expect = 3e-24
 Identities = 60/135 (44%), Positives = 80/135 (59%), Gaps = 2/135 (1%)
 Frame = -2

Query: 829 RNXPXVEXXNVNKXTXLKLXXGGHFGRXVIWTQSAFGRXDPLFGSWKTPSKQKKNFNLPQ 650
           RN P VE  NV +   L+L  GGH GR VIWT+SAFG  D +FGS    ++ KKN+ LP+
Sbjct: 222 RNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVFGSTTEAAQLKKNYFLPE 281

Query: 649 PKMANTDLTRXFKSDEIRKXLRAPN-KRVIRA-TRKLNPLTNXKAMLKLNPYAAVLKRKA 476
             ++N D+TR   SDEI+  ++A    RV RA  +K NPL N   + +LNPYA     KA
Sbjct: 282 NIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNKAVLARLNPYAKAY--KA 339

Query: 475 ILELRRRKNLKALAD 431
            ++L   K  KA  +
Sbjct: 340 NVKLNTGKTPKAAGE 354


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  106 bits (254), Expect = 5e-24
 Identities = 59/135 (43%), Positives = 80/135 (59%), Gaps = 2/135 (1%)
 Frame = -2

Query: 829 RNXPXVEXXNVNKXTXLKLXXGGHFGRXVIWTQSAFGRXDPLFGSWKTPSKQKKNFNLPQ 650
           RN P VE  NV +   L+L  GGH GR VIWT+SAFG  D +FGS    ++ KKN+ LP+
Sbjct: 222 RNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVFGSTTEVAQLKKNYFLPE 281

Query: 649 PKMANTDLTRXFKSDEIRKXLRAPN-KRVIRA-TRKLNPLTNXKAMLKLNPYAAVLKRKA 476
             ++N D+TR   SDEI+  ++A    RV RA  +K NPL N   + +LNPYA     KA
Sbjct: 282 NIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNKAVLSRLNPYAKAY--KA 339

Query: 475 ILELRRRKNLKALAD 431
            +++   K  KA  +
Sbjct: 340 NVKINSEKTPKAAGE 354


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 19/54 (35%), Positives = 32/54 (59%)
 Frame = +2

Query: 497 RVRIEFQHRLVIGERVQFACSTDHAFVGSTEXLPDLIRLEXTCEVSVGHLWLGQ 658
           +V +EF+ RL IG+RV+       AF+GS E +  L+ +  T + ++  L LG+
Sbjct: 207 QVAVEFRKRLNIGDRVKDGLLYKDAFLGS-EAVDVLMHIVRTTDRNLA-LLLGR 258


>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -3

Query: 756 LDVXSFGLSPHSAGLTPYSGHGRHHRNKRRTSTCPSQRWPTLTSH 622
           +D+ S  LS H+   T +S   R H      ST PSQ + +  SH
Sbjct: 299 VDLQSNELSHHNVRTTLFSDDSRFHSKIHTHSTPPSQMY-SAASH 342


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,295,229
Number of Sequences: 5004
Number of extensions: 34872
Number of successful extensions: 98
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)