Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_J02
         (890 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0578 + 4295386-4296489,4297394-4297507                          124   7e-29
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272...   118   5e-27
11_01_0205 + 1617044-1617197,1617845-1618233                           29   5.0  
02_04_0073 - 19471254-19472681                                         29   5.0  
08_02_0934 + 22747742-22748644                                         28   8.7  
04_04_1266 + 32239451-32239829,32239874-32239884                       28   8.7  

>07_01_0578 + 4295386-4296489,4297394-4297507
          Length = 405

 Score =  124 bits (300), Expect = 7e-29
 Identities = 62/140 (44%), Positives = 87/140 (62%), Gaps = 1/140 (0%)
 Frame = -2

Query: 829 RNXPXVEXXNVNKXTXLKLXXGGHFGRXVIWTQSAFGRXDPLFGSWKTPSKQKKNFNLPQ 650
           RN P V+  NV +   L L  GGH GR VIWT+SAF + + ++G+++ PS +KK F LP+
Sbjct: 227 RNLPGVDVANVERLNLLDLAPGGHLGRFVIWTESAFKKLEEVYGTFEAPSLKKKGFILPR 286

Query: 649 PKMANTDLTRXFKSDEIRKXLRAPNKRVIRATRKLNPLTNXKAMLKLNPYAAVLKRKAIL 470
           PKMAN DL R   SDE++  ++  NK V R  ++ NPL N  A+LKLNPY    ++ A L
Sbjct: 287 PKMANADLGRIINSDEVQSVVKPLNKEVKRREKRKNPLKNVAAVLKLNPYFGTARKMATL 346

Query: 469 -ELRRRKNLKALADAEKSGL 413
            E  R K  K   D++++ L
Sbjct: 347 AEAARIKARKEKLDSKRTKL 366


>03_06_0298 -
           32925441-32925998,32926371-32926730,32927161-32927230,
           32927642-32927797,32929181-32929242,32929339-32929352,
           32930421-32930520,32931474-32932574
          Length = 806

 Score =  118 bits (285), Expect = 5e-27
 Identities = 60/140 (42%), Positives = 83/140 (59%), Gaps = 1/140 (0%)
 Frame = -2

Query: 829 RNXPXVEXXNVNKXTXLKLXXGGHFGRXVIWTQSAFGRXDPLFGSWKTPSKQKKNFNLPQ 650
           RN P V+  NV +   L L  GGH GR VIWT+ AF + D ++G + TP+ +KK F LP+
Sbjct: 226 RNLPGVDVANVERLNLLDLAPGGHLGRFVIWTECAFKKLDEVYGGFDTPALKKKGFVLPR 285

Query: 649 PKMANTDLTRXFKSDEIRKXLRAPNKRVIRATRKLNPLTNXKAMLKLNPYAAVLKRKAIL 470
           PKMAN DL+R   SDE++  ++  NK V     + NPL N  A+LKLNPY    ++ A L
Sbjct: 286 PKMANADLSRLINSDEVQSVVKPINKEVKLREARRNPLKNVAAVLKLNPYFGTARKMAAL 345

Query: 469 -ELRRRKNLKALADAEKSGL 413
            E  R K      D++++ L
Sbjct: 346 AEAARVKARTEKLDSKRTKL 365


>11_01_0205 + 1617044-1617197,1617845-1618233
          Length = 180

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 506 IEFQHRLVIGERVQFACSTDHAFVGSTEXL 595
           ++  HRLV G+  +F    +H FV S + L
Sbjct: 35  LQISHRLVAGQNYEFQSGINHGFVNSRKNL 64


>02_04_0073 - 19471254-19472681
          Length = 475

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 732 SPHSAGLTPYSGHGRHHRNKR 670
           +P   G +P S HG HHR+++
Sbjct: 20  APRPRGASPLSSHGHHHRSRK 40


>08_02_0934 + 22747742-22748644
          Length = 300

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 22/72 (30%), Positives = 26/72 (36%), Gaps = 1/72 (1%)
 Frame = -3

Query: 729 PHSAGLTPYSGHGRHHRNKRRTSTCPSQRWPTLTSHVFSSLMRSGXSSV-LPTNA*SVLH 553
           P++A    Y GH  HHR    T+       P   S    S   SG  S+  P N   V  
Sbjct: 152 PYAAAFAAYPGHHHHHR-FAATAAAAMPPPPHYPSWAAGSRYYSGPGSISQPINGSPVAP 210

Query: 552 AN*TRSPXTRRC 517
           A   R P    C
Sbjct: 211 AGMWRLPAAASC 222


>04_04_1266 + 32239451-32239829,32239874-32239884
          Length = 129

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 19/47 (40%), Positives = 22/47 (46%)
 Frame = -3

Query: 753 DVXSFGLSPHSAGLTPYSGHGRHHRNKRRTSTCPSQRWPTLTSHVFS 613
           D  SF  SP    LT Y    R  R    +ST  S  WPT ++HV S
Sbjct: 39  DRPSFKTSPSRKTLTNY----RRTRVNYTSSTRQSISWPTASTHVLS 81


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,262,020
Number of Sequences: 37544
Number of extensions: 267315
Number of successful extensions: 587
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)