Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_I16
         (768 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S...    70   4e-13
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch...    63   5e-11
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    31   0.24 
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    26   5.2  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   6.8  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      25   9.0  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    25   9.0  

>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 69.7 bits (163), Expect = 4e-13
 Identities = 34/62 (54%), Positives = 40/62 (64%)
 Frame = -1

Query: 477 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKF 298
           KA  AQ+ V KG H K  RK+R S  FRRPKT E  R PKY RKS+P  +R+D Y II  
Sbjct: 5   KAKGAQKTVQKGIHNKVARKVRTSTTFRRPKTLELARKPKYARKSVPHASRLDEYKIIVN 64

Query: 297 PL 292
           P+
Sbjct: 65  PI 66



 Score = 54.8 bits (126), Expect = 1e-08
 Identities = 26/37 (70%), Positives = 30/37 (81%)
 Frame = -2

Query: 284 EAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDIN 174
           E+AMKKIED+NTLVF VH  ANK  IK AVKKLY ++
Sbjct: 69  ESAMKKIEDDNTLVFHVHLKANKFTIKNAVKKLYSVD 105



 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 23/34 (67%), Positives = 30/34 (88%)
 Frame = -3

Query: 166 KVNTLIRPDGKKKAYVRLARDYDALDVANKIGII 65
           K+NTLIRP+G KKA+V+L+ D DALDVAN+IG +
Sbjct: 108 KINTLIRPNGTKKAFVKLSADADALDVANRIGFL 141


>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 62.9 bits (146), Expect = 5e-11
 Identities = 31/62 (50%), Positives = 38/62 (61%)
 Frame = -1

Query: 477 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKF 298
           KA  AQ+ V KG H K  +K+R S  FRRPKT +  R PKY RKS+    R+D Y II  
Sbjct: 5   KAKGAQKTVQKGIHNKVAKKVRTSTTFRRPKTLQLSRKPKYARKSVAHAPRLDEYKIIVN 64

Query: 297 PL 292
           P+
Sbjct: 65  PI 66



 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 23/34 (67%), Positives = 30/34 (88%)
 Frame = -3

Query: 166 KVNTLIRPDGKKKAYVRLARDYDALDVANKIGII 65
           K+NTLIRP+G KKA+V+L+ D DALDVAN+IG +
Sbjct: 108 KINTLIRPNGTKKAFVKLSADADALDVANRIGFL 141



 Score = 53.6 bits (123), Expect = 3e-08
 Identities = 25/36 (69%), Positives = 29/36 (80%)
 Frame = -2

Query: 284 EAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDI 177
           E+AMKKIED+NTLVF VH  ANK  IK AV+KLY +
Sbjct: 69  ESAMKKIEDDNTLVFHVHLKANKFTIKEAVRKLYSV 104


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +2

Query: 50  IWNSLYDANFVGNVQCVIISSESYVRFLLTIRPDECVDF 166
           +W +++ A FV +   + +S    +RFL  ++P +C DF
Sbjct: 599 LWITVFIAKFVESYYFLTLSVRDPIRFLQRMKPYDCYDF 637


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 584 SQNCQTQASSFQIEDCTEAQKDWD*GTKKS 495
           S+NCQ  +    +++C EA  D D G  K+
Sbjct: 479 SENCQKLSKQIPLDECNEALFDDDNGDYKA 508


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 92  QCVIISSESYVRFLLTIRPDECVDFXQHLYHRV 190
           +C+ I  E +  FL  I+P E V F Q L+  V
Sbjct: 518 RCIEIGGEQFSGFLTNIKPFEAVTF-QKLFFEV 549


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 56  NSLYDANFVGNVQCVIISSESYVRFLLTIRPD 151
           ++   +NF  NV C I   +S   F   IRPD
Sbjct: 866 HTFISSNFFENVPCYISLEQSLQNFQNDIRPD 897


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +2

Query: 35  FYS*KIWNSLYDANFVGNVQCVIISSESYVRFLLTIRPDECVDF 166
           F S  +W ++  A F+ +   + ++    +RFL  +RP +C D+
Sbjct: 503 FVSWCLWITVLVAKFLESYFFLTLNLADSIRFLGAMRPYDCRDY 546


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,418,775
Number of Sequences: 5004
Number of extensions: 45009
Number of successful extensions: 121
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)