Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_I16
         (768 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40948-2|AAA81728.1|  147|Caenorhabditis elegans Ribosomal prote...    73   2e-13
Z75541-4|CAA99858.1|  146|Caenorhabditis elegans Hypothetical pr...    69   5e-12

>U40948-2|AAA81728.1|  147|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 25.1 protein.
          Length = 147

 Score = 73.3 bits (172), Expect = 2e-13
 Identities = 33/63 (52%), Positives = 45/63 (71%)
 Frame = -1

Query: 477 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKF 298
           KAL A++KVVKG+     R++R SVHFRRP T +  R  ++PRKS PK ++MD + II+ 
Sbjct: 11  KALDAKKKVVKGKRTTHRRQVRTSVHFRRPVTLKTARQARFPRKSAPKTSKMDHFRIIQH 70

Query: 297 PLT 289
           PLT
Sbjct: 71  PLT 73



 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 27/34 (79%), Positives = 29/34 (85%)
 Frame = -3

Query: 166 KVNTLIRPDGKKKAYVRLARDYDALDVANKIGII 65
           KVNTLI P  +KKAYVRL  DYDALDVANKIG+I
Sbjct: 114 KVNTLITPLQQKKAYVRLTADYDALDVANKIGVI 147



 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 24/36 (66%), Positives = 30/36 (83%)
 Frame = -2

Query: 284 EAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDI 177
           E+AMKKIE++NTLVFIV   ANK+ IK AV KLY++
Sbjct: 75  ESAMKKIEEHNTLVFIVSNDANKYQIKDAVHKLYNV 110


>Z75541-4|CAA99858.1|  146|Caenorhabditis elegans Hypothetical
           protein F52B5.6 protein.
          Length = 146

 Score = 68.5 bits (160), Expect = 5e-12
 Identities = 32/67 (47%), Positives = 45/67 (67%)
 Frame = -1

Query: 477 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKF 298
           KA++A++ VVKG      + +R SVHFRRPKT    R P+Y RKS P R+++D++ +IK 
Sbjct: 10  KAIQAKKAVVKGSKTNVRKNVRTSVHFRRPKTLVTARAPRYARKSAPARDKLDSFAVIKA 69

Query: 297 PLTX*SS 277
           P T  SS
Sbjct: 70  PHTTESS 76



 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 28/34 (82%), Positives = 29/34 (85%)
 Frame = -3

Query: 166 KVNTLIRPDGKKKAYVRLARDYDALDVANKIGII 65
           KVNTLI P  +KKAYVRLA DYDALDVANKIG I
Sbjct: 113 KVNTLITPLQQKKAYVRLASDYDALDVANKIGFI 146



 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 25/36 (69%), Positives = 30/36 (83%)
 Frame = -2

Query: 284 EAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDI 177
           E++MKKIED+NTLVFIV   ANKHHIK AV  LY++
Sbjct: 74  ESSMKKIEDHNTLVFIVDEKANKHHIKRAVHALYNV 109


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,420,320
Number of Sequences: 27780
Number of extensions: 257671
Number of successful extensions: 734
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)