Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_T7_I13
(1152 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0278 + 11520245-11520463 33 0.32
07_01_0479 + 3606663-3607448 31 1.3
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 31 1.3
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 29 5.2
09_04_0684 - 19442335-19442990,19443774-19443839,19443935-194440... 29 9.2
02_04_0585 - 24088344-24089366,24089833-24090075,24090305-240906... 29 9.2
01_06_1737 - 39559321-39559461,39559761-39559817,39559919-395601... 29 9.2
>05_03_0278 + 11520245-11520463
Length = 72
Score = 33.5 bits (73), Expect = 0.32
Identities = 15/30 (50%), Positives = 15/30 (50%)
Frame = -1
Query: 759 GEXKCRGFWGGXVFNKGGFWGXXGVXLKRG 670
G C G WGG N GG G GV L RG
Sbjct: 4 GSVVCSGAWGGSASNTGGSSGDDGVGLGRG 33
>07_01_0479 + 3606663-3607448
Length = 261
Score = 31.5 bits (68), Expect = 1.3
Identities = 19/46 (41%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = +3
Query: 141 GGGPPXXGXXGKNPPXXFGXPQKR-GPPXLPXXGKXXGGPPXXKTP 275
GG PP G + PP G PQ R G P P G G PP P
Sbjct: 199 GGPPPPPGPFMRGPPP-MGPPQVRPGMPGGPPPGMRPGMPPPPFRP 243
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 31.5 bits (68), Expect = 1.3
Identities = 34/112 (30%), Positives = 35/112 (31%), Gaps = 11/112 (9%)
Frame = +3
Query: 54 GGPPXXPXXXXGGKXFTXLPSLXGKXGXXGGGPPXXGXXG---KNPPXXF--GXPQKRG- 215
G PP P GG P L G PP G G PP F G P
Sbjct: 1120 GVPPPPPIGGLGGHQAPPAPPLPEGIGGVPPPPPVGGLGGPPAPPPPAGFRGGTPPPNAH 1179
Query: 216 -----PPXLPXXGKXXGGPPXXKTPPNXKXXXXXXXXXXLFSGAPXGXXPPP 356
PP P GGPP TPP + G P G PPP
Sbjct: 1180 GGVAPPPPPPRGHGGVGGPP---TPPG-------APAPPMPPGVPGGPPPPP 1221
Score = 30.3 bits (65), Expect = 3.0
Identities = 23/77 (29%), Positives = 24/77 (31%), Gaps = 10/77 (12%)
Frame = -3
Query: 253 PPXXFPXXGXXGGPLFXGXPKXXGGFXPXXPXXG--GPPPXXPXX--------PIXXGXX 104
PP G P P+ GG P P G GPP P P G
Sbjct: 1123 PPPPIGGLGGHQAPPAPPLPEGIGGVPPPPPVGGLGGPPAPPPPAGFRGGTPPPNAHGGV 1182
Query: 103 VXXFPPXXXQGXXGGPP 53
PP G GGPP
Sbjct: 1183 APPPPPPRGHGGVGGPP 1199
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 29.5 bits (63), Expect = 5.2
Identities = 16/48 (33%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Frame = +1
Query: 136 PXGGXPPXGAXGXKTPPXXLGSXKKGGPXXS-PXGEKXXGXPXXKKHP 276
P PP G PP G G P + P G + G P KK P
Sbjct: 358 PAAPRPPGPGPGPPPPPGAAGRGGGGPPPPALPGGPRARGPPPFKKSP 405
Score = 29.1 bits (62), Expect = 6.9
Identities = 16/37 (43%), Positives = 17/37 (45%)
Frame = +3
Query: 111 PSLXGKXGXXGGGPPXXGXXGKNPPXXFGXPQKRGPP 221
P G G GGGPP PP G P+ RGPP
Sbjct: 371 PPPPGAAGRGGGGPP--------PPALPGGPRARGPP 399
>09_04_0684 -
19442335-19442990,19443774-19443839,19443935-19444032,
19444787-19445157
Length = 396
Score = 28.7 bits (61), Expect = 9.2
Identities = 20/81 (24%), Positives = 25/81 (30%), Gaps = 2/81 (2%)
Frame = +3
Query: 150 PPXXGXXGKNPPXXFGXPQKRGPPXLPXXGKXXGGPPXXKTPPNXKXXXXXXXXXXLF-- 323
PP G PP P + PP G PP PPN + +
Sbjct: 240 PPGQGFNSPPPPGQGPVPPRDAPPMHHAQGNVPPPPPPNAGPPNYQPHAPNPQGYTNYQQ 299
Query: 324 SGAPXGXXPPPFFSXXSXXXQ 386
GAP PP + + Q
Sbjct: 300 GGAPGYQGGPPGYQGSNQGYQ 320
>02_04_0585 -
24088344-24089366,24089833-24090075,24090305-24090655,
24090736-24090823,24091178-24091275,24091813-24092025,
24092150-24092245,24093124-24093195,24093909-24094067
Length = 780
Score = 28.7 bits (61), Expect = 9.2
Identities = 17/56 (30%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
Frame = +3
Query: 123 GKXGXXGGGPPXXGXXGKNPPXXF----GXPQKRGPPXLPXXGKXXGGPPXXKTPP 278
G+ G GGGP G N P G P R P +P G P ++ P
Sbjct: 470 GRTGTGGGGPLSPGAFSMNQPGIVGMLPGMPGARKMPGMPGLGSDDWEVPHSRSKP 525
>01_06_1737 -
39559321-39559461,39559761-39559817,39559919-39560117,
39560217-39560344,39560443-39560548,39560721-39560800,
39561189-39561286,39561368-39561481,39561567-39561707,
39561801-39561885,39562761-39563099
Length = 495
Score = 28.7 bits (61), Expect = 9.2
Identities = 15/49 (30%), Positives = 18/49 (36%)
Frame = -3
Query: 277 GGVFXXGGPPXXFPXXGXXGGPLFXGXPKXXGGFXPXXPXXGGPPPXXP 131
GG GG +P G + G P GG+ P PPP P
Sbjct: 30 GGGGGGGGGGGGYPYGQDAHGGGYYGAPAPQGGYAAPYPAYQQPPPPMP 78
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,292,342
Number of Sequences: 37544
Number of extensions: 371225
Number of successful extensions: 469
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3503158800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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