Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_T7_I12
(852 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 127 2e-30
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 80 3e-16
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 78 2e-15
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 73 4e-14
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 73 7e-14
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 68 1e-12
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 68 2e-12
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 66 8e-12
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 65 1e-11
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 65 1e-11
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 62 1e-10
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 61 2e-10
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 60 5e-10
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 59 7e-10
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 54 2e-08
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 53 4e-08
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 52 1e-07
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 49 7e-07
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 47 4e-06
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 45 2e-05
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 44 2e-05
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 41 3e-04
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 40 6e-04
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 36 0.007
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi... 36 0.010
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 34 0.022
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 34 0.022
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 32 0.090
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 31 0.16
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 31 0.16
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 29 0.84
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 29 1.1
SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces p... 29 1.1
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p... 28 1.5
SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy... 28 1.5
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 28 1.9
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi... 26 7.8
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 127 bits (307), Expect = 2e-30
Identities = 85/272 (31%), Positives = 138/272 (50%), Gaps = 8/272 (2%)
Frame = -3
Query: 793 PVKLXVNSNKEVXFNLGQEXVRIRKEREXDPXAMLAALVXRTFRDRTVVFVQTKRQAHRX 614
PV++ V++ K L QE VR+R +RE AML L F RT++F ++K AH+
Sbjct: 461 PVRVFVDNKKTTAKLLTQEFVRVRPQRELLRPAMLIYLCKELFHRRTIIFFRSKAFAHKM 520
Query: 613 HVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFT 434
V+ G+L + A E+HG+L+Q QR+ +L+ FR+ + + L+ATDVA+RG+DI G+ VIN+
Sbjct: 521 RVIFGLLSLNATEIHGSLSQEQRVRALEDFRDGKCNYLLATDVASRGIDIKGIEVVINYE 580
Query: 433 LPATLEHYIXXXXXXXXXXSRPGCPSRSPARA--------RGIWXXXXXXXXXXXXXPDK 278
PAT E Y+ +R G R+ A +G++
Sbjct: 581 APATHEVYL----HRVGRTARAGRSGRAITLAGEGDRKVLKGVFKNSSAQNTKLVNRNLD 636
Query: 277 YRPISSPNXREKLIKLEPEIVAILDEEYAEKQMNKMEKQTAKLEVVLKKDEAQPGPQHEP 98
+ + +++ +LEP + +LDEE E+++ E+ K E ++K G +
Sbjct: 637 FNKVE--KFGKEIEELEPVVQKVLDEEKQERELKIAERDLKKGENIMKY-----GDEIRS 689
Query: 97 QRQRDWFQTPKQKREEKERLALTTHVEKKKKK 2
+ R WFQ+ K K+ K A K+KK
Sbjct: 690 RPARTWFQSEKDKQASKASEAKDKKSLAKRKK 721
Score = 31.5 bits (68), Expect = 0.16
Identities = 17/44 (38%), Positives = 27/44 (61%)
Frame = -2
Query: 431 AGHLRTLYTPGWVAQPGRVAPGVSVSLAGEGERNLVKSIVKRAS 300
A H L+ G A+ GR G +++LAGEG+R ++K + K +S
Sbjct: 583 ATHEVYLHRVGRTARAGR--SGRAITLAGEGDRKVLKGVFKNSS 624
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 80.2 bits (189), Expect = 3e-16
Identities = 39/82 (47%), Positives = 54/82 (65%)
Frame = -3
Query: 652 VVFVQTKRQAHRXHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARG 473
++FV R A + +L +L ++ ELH + Q +R++SL RFR + A +LVATDVA+RG
Sbjct: 262 IIFVNRTRTAELIYSILRLLELRVTELHSEMVQRERINSLGRFRAEAAKILVATDVASRG 321
Query: 472 LDIPGVNTVINFTLPATLEHYI 407
LDIP V VINF LP + YI
Sbjct: 322 LDIPSVQLVINFDLPRDPDDYI 343
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 77.8 bits (183), Expect = 2e-15
Identities = 40/95 (42%), Positives = 54/95 (56%)
Frame = -3
Query: 691 LAALVXRTFRDRTVVFVQTKRQAHRXHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQ 512
L LV + ++F +T R ++L LG A LHG L+Q RL +L +F+
Sbjct: 276 LVYLVNELAGNSIIIFARTVNDTQRLAILLRTLGFSAIPLHGQLSQSNRLGALNKFKSGA 335
Query: 511 ADVLVATDVAARGLDIPGVNTVINFTLPATLEHYI 407
LVATDVAARGLDIP V+ VIN+ +P + YI
Sbjct: 336 RSTLVATDVAARGLDIPLVDVVINYDIPTDSKAYI 370
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 73.3 bits (172), Expect = 4e-14
Identities = 33/86 (38%), Positives = 52/86 (60%)
Frame = -3
Query: 667 FRDRTVVFVQTKRQAHRXHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATD 488
F ++FV KR L +G A LHG+ +Q QR ++++ R + AD+LVATD
Sbjct: 515 FSPPIIIFVNLKRNIEAIAKQLNAIGWHAVTLHGSKSQEQRERAIEQLRNKTADILVATD 574
Query: 487 VAARGLDIPGVNTVINFTLPATLEHY 410
+A RG+DIP V+ V+N+ + ++E Y
Sbjct: 575 IAGRGIDIPNVSLVLNYNMAKSIEDY 600
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 72.5 bits (170), Expect = 7e-14
Identities = 50/136 (36%), Positives = 70/136 (51%), Gaps = 5/136 (3%)
Frame = -3
Query: 799 KNPVKLXVNSNKEVXFNLGQEXVRI-----RKEREXDPXAMLAALVXRTFRDRTVVFVQT 635
K+PVK+ + S++ + V I KER D + L D+ ++FV
Sbjct: 368 KDPVKITIGSDELAASQNITQIVEILDDPRSKERMLD-NLLRKHLSSGGKDDKILIFVLY 426
Query: 634 KRQAHRXHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGV 455
K++A R L +HG ++Q RL +L F+ + VLVATDVAARGLDIP V
Sbjct: 427 KKEAARVEGTLARK-YNVVGIHGDMSQGARLQALNDFKSGKCPVLVATDVAARGLDIPKV 485
Query: 454 NTVINFTLPATLEHYI 407
VIN T P T+E Y+
Sbjct: 486 QLVINVTFPLTIEDYV 501
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 68.1 bits (159), Expect = 1e-12
Identities = 35/84 (41%), Positives = 49/84 (58%)
Frame = -3
Query: 658 RTVVFVQTKRQAHRXHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAA 479
+T+VF R L L V + LH L+Q +RL SL++F+ VLV TDVAA
Sbjct: 391 KTMVFANGIEDIKRITPFLNELKVPSYPLHAQLDQKKRLQSLEKFKNNPKGVLVCTDVAA 450
Query: 478 RGLDIPGVNTVINFTLPATLEHYI 407
RG+DIP V VI++ +P T + Y+
Sbjct: 451 RGIDIPSVTHVIHYHVPHTADMYV 474
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 67.7 bits (158), Expect = 2e-12
Identities = 34/83 (40%), Positives = 49/83 (59%)
Frame = -3
Query: 655 TVVFVQTKRQAHRXHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAAR 476
T++FV+TKR A L A +HG Q +R +L+ FR + ++VAT VA+R
Sbjct: 433 TLIFVETKRMADTLTDYLLNSNFPATSIHGDRTQRERERALELFRSGRTSIMVATAVASR 492
Query: 475 GLDIPGVNTVINFTLPATLEHYI 407
GLDIP V VIN+ LP ++ Y+
Sbjct: 493 GLDIPNVTHVINYDLPTDIDDYV 515
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 65.7 bits (153), Expect = 8e-12
Identities = 31/78 (39%), Positives = 48/78 (61%)
Frame = -3
Query: 661 DRTVVFVQTKRQAHRXHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVA 482
D T+VFV TK +L G ++++G+L+Q RL+ + FR + ++LV TDVA
Sbjct: 347 DSTLVFVPTKHHVEYVSELLVQAGYSVSKIYGSLDQEARLNEINNFRLGKTNLLVVTDVA 406
Query: 481 ARGLDIPGVNTVINFTLP 428
+RG+DIP + VIN+ P
Sbjct: 407 SRGIDIPLLANVINYDFP 424
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 65.3 bits (152), Expect = 1e-11
Identities = 33/86 (38%), Positives = 50/86 (58%)
Frame = -3
Query: 664 RDRTVVFVQTKRQAHRXHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDV 485
+ R V+FVQ +A + L + +HG L Q +R ++L +FR+ + VL+ATD+
Sbjct: 288 KPRVVIFVQDIERAKALYTELLFDEIHVGVIHGELPQAKREEALAKFRKGEIWVLIATDL 347
Query: 484 AARGLDIPGVNTVINFTLPATLEHYI 407
ARG+D GV VINF P ++ YI
Sbjct: 348 LARGIDFHGVKMVINFDFPQSVHSYI 373
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 64.9 bits (151), Expect = 1e-11
Identities = 39/132 (29%), Positives = 67/132 (50%), Gaps = 1/132 (0%)
Frame = -3
Query: 799 KNPVKLXVNSNKEVXFNLGQEXVRIRKER-EXDPXAMLAALVXRTFRDRTVVFVQTKRQA 623
++P+++ V ++ + Q V + KE + D L V T + V+F T+R+
Sbjct: 215 RDPIRILVKKDELTLEGIKQFYVAVEKEEWKLDTLCDLYETVTVT---QAVIFCNTRRKV 271
Query: 622 HRXHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVI 443
L + +HG ++Q QR + FR + +L+ TD+ ARG+D+ V+ VI
Sbjct: 272 DWLTEQLTERDFTVSSMHGDMDQAQRDTLMHEFRTGSSRILITTDLLARGIDVQQVSLVI 331
Query: 442 NFTLPATLEHYI 407
N+ LPA E+YI
Sbjct: 332 NYDLPANRENYI 343
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 62.1 bits (144), Expect = 1e-10
Identities = 38/131 (29%), Positives = 66/131 (50%), Gaps = 1/131 (0%)
Frame = -3
Query: 796 NPVKLXVNSNKEVXFNLGQEXVRIRKER-EXDPXAMLAALVXRTFRDRTVVFVQTKRQAH 620
NPV++ V ++ L Q + + KE + D L + T + V+F ++R+
Sbjct: 218 NPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLTIT---QAVIFCNSRRKVD 274
Query: 619 RXHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVIN 440
+ +HG + Q +R ++ FR+ + VL+ TD+ ARG+D+ V+ VIN
Sbjct: 275 WLTEKMREANFTVTSMHGEMPQKERDAIMQDFRQGNSRVLICTDIWARGIDVQQVSLVIN 334
Query: 439 FTLPATLEHYI 407
+ LPA E+YI
Sbjct: 335 YDLPANRENYI 345
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 60.9 bits (141), Expect = 2e-10
Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 3/103 (2%)
Frame = -3
Query: 706 DPXAMLAALVXRTFRDR---TVVFVQTKRQAHRXHVMLGMLGVKAAELHGALNQPQRLDS 536
D A L + +DR ++F TKR A L G A +HG Q +R
Sbjct: 352 DKRARLGKDIEEVLKDRDNKVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWV 411
Query: 535 LKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYI 407
L FR ++ ++VATDVA+RG+D+ G+ V N+ P E Y+
Sbjct: 412 LNEFRTGKSPIMVATDVASRGIDVKGITHVFNYDFPGNTEDYV 454
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 59.7 bits (138), Expect = 5e-10
Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 2/133 (1%)
Frame = -3
Query: 799 KNPVKLXVNSNKEVXFNLGQEXVRIRKEREXDPXAM--LAALVXRTFRDRTVVFVQTKRQ 626
K PV++ V V + ++ V +R E + L L RT+VFV +
Sbjct: 622 KKPVEITVGGRSVVASEV-EQIVEVRPEESKFSRLLELLGELYNNQLDVRTLVFVDRQES 680
Query: 625 AHRXHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTV 446
A L G + +HG +Q R ++ ++ DVL+AT V ARGLD+ + V
Sbjct: 681 ADALLSDLMKRGYTSNSIHGGKDQHDRDSTISDYKAGVFDVLIATSVVARGLDVKSLQLV 740
Query: 445 INFTLPATLEHYI 407
+N+ P +E Y+
Sbjct: 741 VNYDCPNHMEDYV 753
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 59.3 bits (137), Expect = 7e-10
Identities = 35/132 (26%), Positives = 71/132 (53%), Gaps = 1/132 (0%)
Frame = -3
Query: 799 KNPVKLXVNSNKEVXFN-LGQEXVRIRKEREXDPXAMLAALVXRTFRDRTVVFVQTKRQA 623
+NP+++ V+ ++ + L Q V++ ++ + + L+ ++ V+FV++ +A
Sbjct: 252 QNPLEIYVDDETKLTLHGLQQHYVKLEEKAKN---RKINDLLDSLEFNQVVIFVKSVSRA 308
Query: 622 HRXHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVI 443
+ +L + +HG L Q +R+ K F++ + VATDV RG+DI VN VI
Sbjct: 309 NELDRLLRECNFPSICIHGGLPQEERIKRYKAFKDFDKRICVATDVFGRGIDIERVNIVI 368
Query: 442 NFTLPATLEHYI 407
N+ +P + + Y+
Sbjct: 369 NYDMPDSPDSYL 380
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 54.4 bits (125), Expect = 2e-08
Identities = 26/96 (27%), Positives = 49/96 (51%)
Frame = -3
Query: 694 MLAALVXRTFRDRTVVFVQTKRQAHRXHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQ 515
+L + + R + + +VF+ + +L + + +LHG Q +R ++ F
Sbjct: 326 LLFSFLKRNLKKKVIVFMSSCASVKYMAELLNYIDLPVLDLHGKQKQQRRTNTFFEFCNA 385
Query: 514 QADVLVATDVAARGLDIPGVNTVINFTLPATLEHYI 407
+ +L+ T+VAARGLDIP V+ ++ + P YI
Sbjct: 386 EKGILLCTNVAARGLDIPAVDWIVQYDPPDDPRDYI 421
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 53.2 bits (122), Expect = 4e-08
Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 4/135 (2%)
Frame = -3
Query: 799 KNP--VKLXVNSNKEVXFNLGQEXVRIRKEREXDPXAMLAALVXRTFRDRTVVFVQTKRQ 626
+NP + + N NL Q + + + D +L + + +T+VF+ + +Q
Sbjct: 239 QNPDFISVHENDTSSTPSNLNQFYLTVPLTEKLD---ILFGFIRTHLKFKTIVFLSSCKQ 295
Query: 625 AHRXHVMLGML--GVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVN 452
+ + G+ LHG Q R + +F + VL TD+ ARGLD P V+
Sbjct: 296 VRFVYETFRRMRPGISLLHLHGKQKQTTRTEVTAKFTSSRHVVLFCTDIVARGLDFPAVD 355
Query: 451 TVINFTLPATLEHYI 407
VI P ++ YI
Sbjct: 356 WVIQLDAPEDVDTYI 370
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 52.0 bits (119), Expect = 1e-07
Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
Frame = -3
Query: 697 AMLAALVXRTFRDRTVVFVQTKRQAHRXH-VMLGMLGVKAAELHGALNQPQRLDSLKRFR 521
++L L R +VF+ T V+ L + LH L QR + FR
Sbjct: 281 SLLQQLTSSNPSSRIIVFLPTISMVDFVGGVLENHLKIPCFILHSGLTTAQRRSITESFR 340
Query: 520 EQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYI 407
+ Q+ +L ATDV ARG+D P + V+ T P+ + YI
Sbjct: 341 KCQSGILFATDVVARGMDFPNITQVVQITGPSNTDDYI 378
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 49.2 bits (112), Expect = 7e-07
Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Frame = -3
Query: 574 LHGALNQPQRLDSLKRFREQQ---ADVLVATDVAARGLDIPGVNTVINFTLPATLEHYI 407
LHG+L+Q R +L F + + +L+ TDVAARGLD+P V+ V+ + P + + Y+
Sbjct: 473 LHGSLSQQIRTSTLNLFSSSEDSGSHILLCTDVAARGLDLPNVDLVVQYDAPFSTDDYL 531
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 46.8 bits (106), Expect = 4e-06
Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 12/108 (11%)
Frame = -3
Query: 694 MLAALVXRTFRDRTVVFVQTKRQAHRXHVMLGMLG---VKAAEL--HGALNQPQ------ 548
+L A ++ RTV+FV+ K A + + L ++A HG +Q +
Sbjct: 351 LLKATYRKSDSVRTVIFVERKATAFTLSLFMKTLNLPNIRAHSFIGHGPSDQGEFSMTFR 410
Query: 547 -RLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYI 407
+ D+L +F+ + +VL+AT VA G+D+P N VI F + T+ Y+
Sbjct: 411 RQKDTLHKFKTGKYNVLIATAVAEEGIDVPSCNLVIRFNICRTVTQYV 458
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 44.8 bits (101), Expect = 2e-05
Identities = 26/77 (33%), Positives = 40/77 (51%)
Frame = -3
Query: 658 RTVVFVQTKRQAHRXHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAA 479
++++F + K A + G A L G L QR + FR + VLV T+V A
Sbjct: 354 QSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIA 413
Query: 478 RGLDIPGVNTVINFTLP 428
RG+D+ VN V+N+ +P
Sbjct: 414 RGIDVSQVNLVVNYDMP 430
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 44.4 bits (100), Expect = 2e-05
Identities = 24/85 (28%), Positives = 37/85 (43%)
Frame = -3
Query: 661 DRTVVFVQTKRQAHRXHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVA 482
+++++F + + + LG H + Q R FR LV +D+
Sbjct: 282 NQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMLQSHRNRVFHNFRNGVCRNLVCSDLL 341
Query: 481 ARGLDIPGVNTVINFTLPATLEHYI 407
RG+DI VN VINF P E Y+
Sbjct: 342 TRGIDIQAVNVVINFDFPKNAETYL 366
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 40.7 bits (91), Expect = 3e-04
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Frame = -3
Query: 646 FVQTKRQAHRXHVMLGML------GVKAAELHGALNQPQRLDSLKRFREQQADVLVATDV 485
FV++ A R H +L ++ +L++ +R + RF ++LV +D+
Sbjct: 437 FVKSNEAAARLHRLLELIHESLNQSFSCGLFTSSLSRDERKKIISRFATGDLNLLVCSDL 496
Query: 484 AARGLDIPGVNTVINFTLPATLEHYI 407
ARG+D+ VIN+ P ++ Y+
Sbjct: 497 MARGIDVANTQNVINYDPPLSVRSYV 522
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 39.5 bits (88), Expect = 6e-04
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = -3
Query: 574 LHGALNQPQRLDSLKRFREQ-QADVLVATDVAARGLDIPGVNTVINFTLP 428
LHG Q R + ++F++ + VL TD+A+RGLDIP V+ V+ P
Sbjct: 288 LHGQQVQSNRSRNFEKFKKSNKKTVLFTTDIASRGLDIPNVDFVLQLDPP 337
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 35.9 bits (79), Expect = 0.007
Identities = 28/121 (23%), Positives = 57/121 (47%)
Frame = -3
Query: 799 KNPVKLXVNSNKEVXFNLGQEXVRIRKEREXDPXAMLAALVXRTFRDRTVVFVQTKRQAH 620
+NP L V +KE L Q V+ ++ + +L L R + + ++FV + +
Sbjct: 218 RNPFILAVK-DKEASGKLTQYVVKCSEQDKFLLAYILLKL--RLIKGKILIFVNEINRCY 274
Query: 619 RXHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVIN 440
R + L G+K+ L+ L RL L+++ + +++ATD + +I + ++
Sbjct: 275 RLKLFLEQFGLKSLVLNSELPVNSRLHILEQYNKGLYQIIIATDESGMMGEIEELENNVD 334
Query: 439 F 437
F
Sbjct: 335 F 335
Score = 29.1 bits (62), Expect = 0.84
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -3
Query: 481 ARGLDIPGVNTVINFTLPATLEHYI 407
ARGLD V V+NF +P+ + YI
Sbjct: 387 ARGLDFENVACVLNFDMPSNTKSYI 411
>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 606
Score = 35.5 bits (78), Expect = 0.010
Identities = 21/74 (28%), Positives = 35/74 (47%)
Frame = -3
Query: 664 RDRTVVFVQTKRQAHRXHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDV 485
R T+VF + + LG+ A L G N +R ++ FR+++ VLV V
Sbjct: 265 RSSTLVFCINVEHSLKVCNAFRKLGIDARALFGETNDSERETLIQDFRKKKFPVLVNCMV 324
Query: 484 AARGLDIPGVNTVI 443
G DIP ++ ++
Sbjct: 325 LTEGTDIPNIDCLM 338
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 34.3 bits (75), Expect = 0.022
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Frame = -3
Query: 682 LVXRTFRDRTVVFVQTKRQAHRXHVMLGM-LGVKAAELHGALNQPQRLDSLKRFREQQAD 506
++ FR+ T ++ T A R V + +G + +NQ Q+ +++ +FR +
Sbjct: 475 MIFTEFRN-TAEYITTTLLAIRPMVRASLFIGQANSAYSTGMNQMQQKETIDQFRAGVIN 533
Query: 505 VLVATDVAARGLDIPGVNTVI 443
LVAT + GLDI + +I
Sbjct: 534 TLVATSIGEEGLDIGDTDMII 554
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 34.3 bits (75), Expect = 0.022
Identities = 15/58 (25%), Positives = 33/58 (56%)
Frame = -3
Query: 595 LGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPAT 422
+G A ++Q + +++K+F++ + + L+AT + GLDI V+ +I + A+
Sbjct: 465 IGQSAVRKAAGMSQKLQNETVKQFQKGEVNTLIATSIGEEGLDIGEVDMIICYDASAS 522
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 32.3 bits (70), Expect = 0.090
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = -3
Query: 592 GVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEH 413
G+KA H L + +R ++ ++VAT G+D V VI+ + P +LE
Sbjct: 767 GLKAWHYHAGLEKVERQRIQNEWQSGSYKIIVATIAFGMGVDKGDVRFVIHHSFPKSLEG 826
Query: 412 Y 410
Y
Sbjct: 827 Y 827
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 31.5 bits (68), Expect = 0.16
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
Frame = -3
Query: 658 RTVVFVQTKRQAHRXHVMLGMLGVKAAELH-----GALNQPQRLDSLKRFREQQAD--VL 500
R ++F +TK+ H L + A H G ++ +R + FR ++
Sbjct: 1417 RAIIFCRTKKDVEYIHRRLHQSDL-FAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIM 1475
Query: 499 VATDVAARGLDIPGVNTVINFTLPATLEHYI 407
+AT G++ GV V+++ LPA+ Y+
Sbjct: 1476 IATKAFGLGINYMGVRLVVHYGLPASSMDYV 1506
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 31.5 bits (68), Expect = 0.16
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
Frame = -3
Query: 658 RTVVFVQTKRQAHRXHVMLGMLGVKAAELH-----GALNQPQRLDSLKRFREQQAD--VL 500
R ++F +TK+ H L + A H G ++ +R + FR ++
Sbjct: 1417 RAIIFCRTKKDVEYIHRRLHQSDL-FAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIM 1475
Query: 499 VATDVAARGLDIPGVNTVINFTLPATLEHYI 407
+AT G++ GV V+++ LPA+ Y+
Sbjct: 1476 IATKAFGLGINYMGVRLVVHYGLPASSMDYV 1506
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 29.1 bits (62), Expect = 0.84
Identities = 14/52 (26%), Positives = 28/52 (53%)
Frame = -3
Query: 202 EEYAEKQMNKMEKQTAKLEVVLKKDEAQPGPQHEPQRQRDWFQTPKQKREEK 47
E+ +EK + K+E + K + L ++E + + +R+ W Q+PK + K
Sbjct: 999 EDLSEKDLKKIEAKATKKKK-LTRNEIKAKERRARERELAWLQSPKGTEKPK 1049
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 28.7 bits (61), Expect = 1.1
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = -3
Query: 190 EKQMNKMEKQTAKLEVVL-KKDEAQPGPQHEPQRQRDWFQTPKQKREEKERLALTTHVEK 14
E ++N +E + V +KDE + + E +R+++ + K+K+E+KE+ EK
Sbjct: 416 EAEVNGVEDSKKRKSVESSEKDEDEAAKKEEKRRKKEAKKEKKEKKEKKEK------KEK 469
Query: 13 KKK 5
KKK
Sbjct: 470 KKK 472
>SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 28.7 bits (61), Expect = 1.1
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -3
Query: 244 KLIKLEPEIVAILDEEYAEKQMNKMEKQTA 155
K+I EPE+ AI D E ++KQ+ + E + A
Sbjct: 116 KMINEEPELKAIEDTEESKKQLQREESKEA 145
>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 723
Score = 28.3 bits (60), Expect = 1.5
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -3
Query: 202 EEYAEKQMNKMEKQTAKLEVVLKKDEAQPGPQHEPQRQRD 83
E ++ K E+ AK + L +DE +P P H RD
Sbjct: 404 ERVTALELQKSERPLAKQQNALLEDEGKPTPSHTLLHNRD 443
>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 327
Score = 28.3 bits (60), Expect = 1.5
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = -3
Query: 178 NKMEKQTAKLEVVLKKDEAQPGPQHEPQRQRDWFQTPKQKREEKERLALTTHVEKKKKK 2
+K++ + E LKK+E + + E + Q Q K+K +EKER+ E+ KK
Sbjct: 269 SKLDLEIESGEYFLKKEEKERKKRAEKKEQ----QKEKKKEKEKERMKAFIPPEESSKK 323
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 27.9 bits (59), Expect = 1.9
Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Frame = -3
Query: 274 RPISSPNXREKLIKLEPEIVAILDEEYAEKQMNKMEKQTAKLEVVLKKDEAQPGPQHEPQ 95
R + +EK + ++ +EE ++ ++ +Q A+ + K+ E + E +
Sbjct: 586 RELKKIREKEKKRDKKKQLKLAKEEERQRREAERLAEQAAQKALEAKRQEEARKKREEQR 645
Query: 94 RQRD----WFQTPKQKREEKERLALTTHVEKKKKK 2
+R+ + +QKREEK++ EKK KK
Sbjct: 646 LKREQEKKQQELERQKREEKQK---QKEREKKLKK 677
>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 798
Score = 25.8 bits (54), Expect = 7.8
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Frame = -3
Query: 205 DEEYAEKQMNKMEKQ---TAKLEVVLKKDEAQPGPQHEPQRQRDWFQTPKQKREEKERLA 35
++E Q NK++ +A +E V +K+ + + E + +QKREEK RLA
Sbjct: 608 EQEQVSNQANKVDLNKIISAAMESVNQKNVLKAQKEEEER-------IAQQKREEKRRLA 660
Query: 34 LTTHVEKKKKK 2
+++ KK
Sbjct: 661 YEESLKRHAKK 671
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,340,975
Number of Sequences: 5004
Number of extensions: 39196
Number of successful extensions: 171
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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