Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_I10
         (773 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S...    27   3.0  
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    27   3.9  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    26   5.2  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    25   9.1  

>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
           Mde5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 339 CRAGWKGVAERVDYAPGTGPLALF 268
           C   W+G+ +++DY  G G  A++
Sbjct: 60  CGGNWRGIIDKLDYIQGMGFTAIW 83


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -3

Query: 357 IKVNKPCRAGWKGVAERVDYAPGTGPLAL 271
           +K  K C   W+G+ + +DY    G  A+
Sbjct: 54  VKAEKYCGGNWQGIVDHLDYIRDLGFTAI 82


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +2

Query: 233 SSEEQVSRRAAGNRASGPVPGA*STRSATPFHPAL 337
           S++ Q++R  +  +AS PVP +  +RSA   +P+L
Sbjct: 189 STQRQMARPMSNLQASQPVPSSTFSRSAVVPNPSL 223


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +1

Query: 301  IYTFRHSFPSRSTGLVNFDCDHNRRRLHH 387
            + +F   FPS++ G+V+ +C  + R L +
Sbjct: 1375 VESFLSRFPSKTLGIVSLNCGFHARALFY 1403


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,945,567
Number of Sequences: 5004
Number of extensions: 56126
Number of successful extensions: 148
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)