Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_I10
         (773 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0703 + 6212409-6212456,6212661-6212742,6214031-6214106,621...    29   3.1  
06_03_0992 - 26680555-26680840,26680893-26681279,26681364-266824...    29   3.1  
03_02_0609 - 9823120-9823573,9823903-9824102,9824240-9824335,982...    29   5.4  
11_03_0090 - 9797967-9798814,9798931-9799312                           28   7.2  
07_01_0511 + 3806475-3806876,3807914-3808039,3808120-3808193,380...    28   7.2  
03_01_0504 - 3792170-3792565                                           28   9.5  
02_04_0219 + 21007875-21008253,21009774-21009811,21009948-210099...    28   9.5  

>08_01_0703 +
           6212409-6212456,6212661-6212742,6214031-6214106,
           6214498-6214594,6214760-6214862,6214973-6215103,
           6215285-6215462,6215528-6215715,6215945-6216154,
           6216231-6216578,6216660-6216786,6217304-6217455
          Length = 579

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 3/90 (3%)
 Frame = -3

Query: 561 PLXKDCTPRYGDVC--KYEILTDRSQPFTINVEGVIRNTEPLDYEKSHNHILSV-VAYDC 391
           PL    T RYG+    K     D+S    +N  G+    +    E S+N+ L    A++C
Sbjct: 259 PLSLKSTLRYGENPHQKAAFYGDKSLS-VVNAGGIATAIQHHGKEMSYNNYLDADAAWNC 317

Query: 390 GMMQSTPVMVTIKVNKPCRAGWKGVAERVD 301
                +P  V +K   PC     GVA R D
Sbjct: 318 VSEFESPTCVVVKHTNPC-----GVASRQD 342


>06_03_0992 -
           26680555-26680840,26680893-26681279,26681364-26682441,
           26682537-26683083
          Length = 765

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 768 SDTPLNCEKRRXXQIRYCRSWLRRVP 691
           S+TPL+C         YC SWL  VP
Sbjct: 528 SNTPLHCLAHSLNPKYYCESWLAEVP 553


>03_02_0609 -
           9823120-9823573,9823903-9824102,9824240-9824335,
           9824454-9824567,9824711-9824774,9825206-9825312
          Length = 344

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +2

Query: 596 LVDGLHVRGLTEDWSVFVHVCHRYVNGDSVGIGTRRNQLRQYRICXXRRFSQFSGVSDA 772
           LV+G  V   T +W + V     Y++ D +  G    ++R+  +     F +FS   DA
Sbjct: 45  LVEGFSVFYTTREWKLQVGDAFEYLSHDGLLFGNHWCRIREVELKRDYAFIEFSDPRDA 103


>11_03_0090 - 9797967-9798814,9798931-9799312
          Length = 409

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 766 RYPAELRETTXXTNSILPQLVATGSYSNTVP 674
           R+PA LR  T     ++P  VA G Y + +P
Sbjct: 40  RFPANLRGVTKEGRYLVPSAVAIGPYHHDLP 70


>07_01_0511 +
           3806475-3806876,3807914-3808039,3808120-3808193,
           3808278-3808347,3808431-3808486,3808578-3808649,
           3808678-3808811,3808967-3809030,3809111-3809240,
           3809326-3809541,3809629-3809750,3810527-3810701,
           3810788-3810878,3811040-3811197,3811330-3811518,
           3813257-3813340,3813362-3813536,3815300-3815955,
           3816226-3816648,3816752-3816790
          Length = 1151

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/29 (41%), Positives = 21/29 (72%)
 Frame = +2

Query: 593 SLVDGLHVRGLTEDWSVFVHVCHRYVNGD 679
           S+++ LH +GL+ D    ++VC R+V+GD
Sbjct: 258 SILEKLHSKGLSLDAPFLIYVC-RFVHGD 285


>03_01_0504 - 3792170-3792565
          Length = 131

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +1

Query: 682 CWNRNPSQPTAAISNLXXXSFLAVQRGI 765
           CWN NP  P    S++    FL    GI
Sbjct: 90  CWNNNPLVPACVASSVRPSWFLTASPGI 117


>02_04_0219 +
           21007875-21008253,21009774-21009811,21009948-21009976,
           21010398-21010443,21010567-21010681,21010790-21010857,
           21011780-21011974,21012180-21012281,21012889-21013119,
           21013514-21013684
          Length = 457

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +1

Query: 682 CWNRNPSQPTAAISNLXXXSFLAVQRGI 765
           CWN NP  P    S++    FL    GI
Sbjct: 90  CWNNNPLVPACVASSVRPSWFLTASPGI 117


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,620,931
Number of Sequences: 37544
Number of extensions: 424758
Number of successful extensions: 1124
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1090
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1124
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)