Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_I07
         (744 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   261   4e-72
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   261   4e-72

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  261 bits (640), Expect = 4e-72
 Identities = 118/145 (81%), Positives = 132/145 (91%)
 Frame = -2

Query: 620 FSGXGNCISKIFKSDGLIGLYRGFGVSVQGIIXYRASYFGXYDTARGMLPDPKNTPIVIS 441
           F+G GNC++KIFK+DG+ GLYRGFGVSVQGII YRA+YFG YDTARGMLPDPK TP +IS
Sbjct: 156 FTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPKKTPFLIS 215

Query: 440 WAIAQTVTTVAGIISYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFKG 261
           W IAQ VTTVAGI+SYPFDTVRRRMMMQSGRAKS+ILYK+T+HCWATI KTEG +AFFKG
Sbjct: 216 WGIAQVVTTVAGIVSYPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTEGGNAFFKG 275

Query: 260 AXSNVLRGTGGAFVLVLYDEIKKVL 186
           A SN+LRGTGGA VLVLYDEIK +L
Sbjct: 276 AFSNILRGTGGALVLVLYDEIKNLL 300



 Score = 49.2 bits (112), Expect = 4e-08
 Identities = 23/33 (69%), Positives = 25/33 (75%)
 Frame = -3

Query: 718 GAAGATXXGXVYPLXFARTRFAADVGKGDGQRD 620
           GAAGAT    VYPL FARTR AADVGK  G+R+
Sbjct: 123 GAAGATSLCFVYPLDFARTRLAADVGKAGGERE 155



 Score = 33.1 bits (72), Expect = 0.003
 Identities = 29/126 (23%), Positives = 49/126 (38%), Gaps = 6/126 (4%)
 Frame = -2

Query: 620 FSGXGNCISKIFKSDGLIGLYRGFGVSVQGIIXYRASYFGXYDTARGMLPD--PKNTPIV 447
           + G  +C  +I K  G +  +RG   +V      +A  F   D  + +      KNT  +
Sbjct: 53  YKGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFL 112

Query: 446 ISWAIAQTVTTVAGIIS----YPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGT 279
             +         AG  S    YP D  R R+    G+A  +  +    +C   I K +G 
Sbjct: 113 RYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGI 172

Query: 278 SAFFKG 261
           +  ++G
Sbjct: 173 TGLYRG 178



 Score = 31.5 bits (68), Expect = 0.009
 Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = -2

Query: 437 AIAQTVTTVAGIISYPFDTVRRRMMMQ--SGRAKSDILYKNTIHCWATIAKTEGTSAFFK 264
           A A + TTVA     P + V+  + +Q  S +   +  YK  I C+  I K +G  ++++
Sbjct: 20  AAAISKTTVA-----PIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWR 74

Query: 263 GAXSNVLR 240
           G  +NV+R
Sbjct: 75  GNLANVIR 82


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  261 bits (640), Expect = 4e-72
 Identities = 118/145 (81%), Positives = 132/145 (91%)
 Frame = -2

Query: 620 FSGXGNCISKIFKSDGLIGLYRGFGVSVQGIIXYRASYFGXYDTARGMLPDPKNTPIVIS 441
           F+G GNC++KIFK+DG+ GLYRGFGVSVQGII YRA+YFG YDTARGMLPDPK TP +IS
Sbjct: 156 FTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPKKTPFLIS 215

Query: 440 WAIAQTVTTVAGIISYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFKG 261
           W IAQ VTTVAGI+SYPFDTVRRRMMMQSGRAKS+ILYK+T+HCWATI KTEG +AFFKG
Sbjct: 216 WGIAQVVTTVAGIVSYPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTEGGNAFFKG 275

Query: 260 AXSNVLRGTGGAFVLVLYDEIKKVL 186
           A SN+LRGTGGA VLVLYDEIK +L
Sbjct: 276 AFSNILRGTGGALVLVLYDEIKNLL 300



 Score = 49.2 bits (112), Expect = 4e-08
 Identities = 23/33 (69%), Positives = 25/33 (75%)
 Frame = -3

Query: 718 GAAGATXXGXVYPLXFARTRFAADVGKGDGQRD 620
           GAAGAT    VYPL FARTR AADVGK  G+R+
Sbjct: 123 GAAGATSLCFVYPLDFARTRLAADVGKAGGERE 155



 Score = 33.1 bits (72), Expect = 0.003
 Identities = 29/126 (23%), Positives = 49/126 (38%), Gaps = 6/126 (4%)
 Frame = -2

Query: 620 FSGXGNCISKIFKSDGLIGLYRGFGVSVQGIIXYRASYFGXYDTARGMLPD--PKNTPIV 447
           + G  +C  +I K  G +  +RG   +V      +A  F   D  + +      KNT  +
Sbjct: 53  YKGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFL 112

Query: 446 ISWAIAQTVTTVAGIIS----YPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGT 279
             +         AG  S    YP D  R R+    G+A  +  +    +C   I K +G 
Sbjct: 113 RYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGI 172

Query: 278 SAFFKG 261
           +  ++G
Sbjct: 173 TGLYRG 178



 Score = 31.5 bits (68), Expect = 0.009
 Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = -2

Query: 437 AIAQTVTTVAGIISYPFDTVRRRMMMQ--SGRAKSDILYKNTIHCWATIAKTEGTSAFFK 264
           A A + TTVA     P + V+  + +Q  S +   +  YK  I C+  I K +G  ++++
Sbjct: 20  AAAISKTTVA-----PIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWR 74

Query: 263 GAXSNVLR 240
           G  +NV+R
Sbjct: 75  GNLANVIR 82


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,972
Number of Sequences: 438
Number of extensions: 2664
Number of successful extensions: 12
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)