Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_I02
         (794 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0578 + 4295386-4296489,4297394-4297507                          107   1e-23
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272...   104   7e-23
03_02_0027 + 5100865-5100878,5102241-5102708,5102795-5103021,510...    31   0.80 
02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216     30   2.4  
02_04_0073 - 19471254-19472681                                         29   4.3  
03_03_0125 - 14630078-14630136,14630197-14631160                       28   9.8  
03_03_0122 - 14617879-14618871                                         28   9.8  

>07_01_0578 + 4295386-4296489,4297394-4297507
          Length = 405

 Score =  107 bits (257), Expect = 1e-23
 Identities = 49/97 (50%), Positives = 68/97 (70%)
 Frame = -1

Query: 677 PGVEXXXXXXXXXXXLAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKM 498
           PGV+           LAPGGHLGRFVIWT+SAF +L+ ++G+++ PS +KK F LP+PKM
Sbjct: 230 PGVDVANVERLNLLDLAPGGHLGRFVIWTESAFKKLEEVYGTFEAPSLKKKGFILPRPKM 289

Query: 497 ANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTN 387
           AN DL R++ SDE++ V++  NK V R  ++ NPL N
Sbjct: 290 ANADLGRIINSDEVQSVVKPLNKEVKRREKRKNPLKN 326


>03_06_0298 -
           32925441-32925998,32926371-32926730,32927161-32927230,
           32927642-32927797,32929181-32929242,32929339-32929352,
           32930421-32930520,32931474-32932574
          Length = 806

 Score =  104 bits (250), Expect = 7e-23
 Identities = 49/97 (50%), Positives = 65/97 (67%)
 Frame = -1

Query: 677 PGVEXXXXXXXXXXXLAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKM 498
           PGV+           LAPGGHLGRFVIWT+ AF +LD ++G + TP+ +KK F LP+PKM
Sbjct: 229 PGVDVANVERLNLLDLAPGGHLGRFVIWTECAFKKLDEVYGGFDTPALKKKGFVLPRPKM 288

Query: 497 ANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTN 387
           AN DL+RL+ SDE++ V++  NK V     + NPL N
Sbjct: 289 ANADLSRLINSDEVQSVVKPINKEVKLREARRNPLKN 325


>03_02_0027 +
           5100865-5100878,5102241-5102708,5102795-5103021,
           5103670-5104577
          Length = 538

 Score = 31.5 bits (68), Expect = 0.80
 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
 Frame = -2

Query: 643 TS*SWLRGVILDVSSSGLSPHSAGLTPYSGHGRHHRNKRRTSTCPSQ--RWPTLTSHVFS 470
           +S S+LR + LD+SSS  +P S+       H  HH+   +     S    WP       S
Sbjct: 376 SSSSFLRCLGLDMSSSSSAPPSSSGQQQQHHHHHHQETMQVPLPASSLPEWPPRLQPEPS 435

Query: 469 SLMRSGRSSVLPTNA 425
            ++ SG    LP +A
Sbjct: 436 PMLSSGLGLGLPYDA 450


>02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216
          Length = 1030

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = -1

Query: 629 APG--GHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANT 489
           APG  G  GR+V+   SA   LDP F SW   S++ K F++ +   A++
Sbjct: 670 APGVDGCSGRYVV-AASAGNALDPGFCSWDYYSREAKAFHIEEISHASS 717


>02_04_0073 - 19471254-19472681
          Length = 475

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 589 SPHSAGLTPYSGHGRHHRNKR 527
           +P   G +P S HG HHR+++
Sbjct: 20  APRPRGASPLSSHGHHHRSRK 40


>03_03_0125 - 14630078-14630136,14630197-14631160
          Length = 340

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = -1

Query: 611 GRFVIWTQSAFGRL-DPLFGSWK 546
           G FV+W   AFG L   L G+WK
Sbjct: 127 GGFVVWADRAFGPLAGSLLGTWK 149


>03_03_0122 - 14617879-14618871
          Length = 330

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = -1

Query: 611 GRFVIWTQSAFGRL-DPLFGSWK 546
           G FV+W   AFG L   L G+WK
Sbjct: 124 GGFVVWADRAFGPLAGSLLGTWK 146


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,483,087
Number of Sequences: 37544
Number of extensions: 321538
Number of successful extensions: 788
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)