Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_H23
         (803 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC111727-1|AAI11728.1| 1077|Homo sapiens transcription elongatio...    32   2.8  
AF017789-1|AAB80727.1| 1098|Homo sapiens putative transcription ...    32   2.8  
AB209910-1|BAD93147.1| 1081|Homo sapiens transcription elongatio...    32   2.8  

>BC111727-1|AAI11728.1| 1077|Homo sapiens transcription elongation
           regulator 1 protein.
          Length = 1077

 Score = 31.9 bits (69), Expect = 2.8
 Identities = 18/42 (42%), Positives = 24/42 (57%)
 Frame = -1

Query: 701 PSPAISGTSTRSSNPRFHTPTTPDLTSISINPLTPX*KEFAP 576
           P+PA+S TST SS P   T TT   TS++    TP  ++  P
Sbjct: 266 PAPAVS-TSTSSSTPSSTTSTTTTATSVAQTVSTPTTQDQTP 306


>AF017789-1|AAB80727.1| 1098|Homo sapiens putative transcription
           factor CA150 protein.
          Length = 1098

 Score = 31.9 bits (69), Expect = 2.8
 Identities = 18/42 (42%), Positives = 24/42 (57%)
 Frame = -1

Query: 701 PSPAISGTSTRSSNPRFHTPTTPDLTSISINPLTPX*KEFAP 576
           P+PA+S TST SS P   T TT   TS++    TP  ++  P
Sbjct: 266 PAPAVS-TSTSSSTPSSTTSTTTTATSVAQTVSTPTTQDQTP 306


>AB209910-1|BAD93147.1| 1081|Homo sapiens transcription elongation
           regulator 1 variant protein.
          Length = 1081

 Score = 31.9 bits (69), Expect = 2.8
 Identities = 18/42 (42%), Positives = 24/42 (57%)
 Frame = -1

Query: 701 PSPAISGTSTRSSNPRFHTPTTPDLTSISINPLTPX*KEFAP 576
           P+PA+S TST SS P   T TT   TS++    TP  ++  P
Sbjct: 270 PAPAVS-TSTSSSTPSSTTSTTTTATSVAQTVSTPTTQDQTP 310


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,390,383
Number of Sequences: 237096
Number of extensions: 2264816
Number of successful extensions: 5880
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5880
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9924838204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)