Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_H13
         (833 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   3.3  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   7.6  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 15/45 (33%), Positives = 16/45 (35%)
 Frame = +1

Query: 622  PXXXXPEXPXPXXGXPXXPXXPXXPPXRXXXLAAXXPXPXPSPXP 756
            P    P  P P    P  P     PP     +AA  P P PS  P
Sbjct: 1097 PSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAA-PPVPVPSGAP 1140



 Score = 27.1 bits (57), Expect = 3.3
 Identities = 16/53 (30%), Positives = 17/53 (32%)
 Frame = +1

Query: 622  PXXXXPEXPXPXXGXPXXPXXPXXPPXRXXXLAAXXPXPXPSPXPXSXXXPSS 780
            P    P  P P  G P  P     PP      A   P P P+        PSS
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPPSTAPPV-PTPSAGLPPVPVPTAKAPPVPAPSS 1244



 Score = 26.6 bits (56), Expect = 4.3
 Identities = 14/45 (31%), Positives = 15/45 (33%)
 Frame = +1

Query: 622  PXXXXPEXPXPXXGXPXXPXXPXXPPXRXXXLAAXXPXPXPSPXP 756
            P    P  P P  G P  P     PP     +    P P PS  P
Sbjct: 1174 PSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGV-PPVPPPSTAP 1217


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 14/44 (31%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
 Frame = +1

Query: 646 PXPXXGXPXXPXXPXX-PPXRXXXLAAXXPXPXPSPXPXSXXXP 774
           P      P  P  P   PP R   L+A  P P P P   +   P
Sbjct: 224 PTSTSAPPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSP 267


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,219,075
Number of Sequences: 5004
Number of extensions: 13197
Number of successful extensions: 44
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)