Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_T7_H13
(833 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 31 1.5
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 30 2.6
03_01_0515 - 3864796-3865425 30 2.6
12_01_0877 - 8415186-8415272,8415696-8416310 29 3.5
08_01_0059 - 394001-394708 29 4.6
02_04_0658 - 24793219-24794109 29 4.6
12_02_1174 - 26696869-26698191 29 6.0
12_02_0299 - 17051570-17052474,17053542-17053755 29 6.0
10_06_0039 - 9966744-9967535,9968241-9968482,9969021-9969223,996... 29 6.0
07_03_0890 - 22332768-22333382 28 8.0
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/45 (31%), Positives = 15/45 (33%)
Frame = +1
Query: 622 PXXXXPEXPXPXXGXPXXPXXPXXPPXRXXXLAAXXPXPXPSPXP 756
P P P P P P PP A+ P P P P P
Sbjct: 549 PPPPPPSGNKPAFSPPPPPPPPPPPPLPQSNYASSQPPPPPPPPP 593
Score = 28.3 bits (60), Expect = 8.0
Identities = 12/37 (32%), Positives = 13/37 (35%)
Frame = +1
Query: 646 PXPXXGXPXXPXXPXXPPXRXXXLAAXXPXPXPSPXP 756
P P P P P PP + P P P P P
Sbjct: 537 PSPTAAAPPPPPPPPPPPSGNKPAFSPPPPPPPPPPP 573
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/46 (30%), Positives = 15/46 (32%)
Frame = +1
Query: 637 PEXPXPXXGXPXXPXXPXXPPXRXXXLAAXXPXPXPSPXPXSXXXP 774
P P P P P P PP P P P+P P P
Sbjct: 1161 PPSPPPATPPPPPPLSPSLPPPPPPPPLPSGPPPQPAPPPLPIQPP 1206
>03_01_0515 - 3864796-3865425
Length = 209
Score = 29.9 bits (64), Expect = 2.6
Identities = 17/47 (36%), Positives = 17/47 (36%)
Frame = +1
Query: 622 PXXXXPEXPXPXXGXPXXPXXPXXPPXRXXXLAAXXPXPXPSPXPXS 762
P P P P P P PP AA P P PSP P S
Sbjct: 68 PLMPPPPPPPSVTSSPPPPPLPPPPPPP----AASPPPPPPSPPPPS 110
>12_01_0877 - 8415186-8415272,8415696-8416310
Length = 233
Score = 29.5 bits (63), Expect = 3.5
Identities = 13/43 (30%), Positives = 15/43 (34%)
Frame = +1
Query: 622 PXXXXPEXPXPXXGXPXXPXXPXXPPXRXXXLAAXXPXPXPSP 750
P P+ P P P P PP L P P P+P
Sbjct: 156 PKKEEPKPPSPPREAEPEPEPPLPPPEEPTPLVRNEPSPAPTP 198
>08_01_0059 - 394001-394708
Length = 235
Score = 29.1 bits (62), Expect = 4.6
Identities = 16/45 (35%), Positives = 16/45 (35%)
Frame = +1
Query: 622 PXXXXPEXPXPXXGXPXXPXXPXXPPXRXXXLAAXXPXPXPSPXP 756
P P P P P P P PP A P P PSP P
Sbjct: 30 PPIRPPPPPTPRPYAPPPPSHPLAPPPPHISPPAPVP-PPPSPPP 73
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/46 (32%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Frame = +1
Query: 646 PXPXXGXPXXPXXPXXPPXRXXXLAA--XXPXPXPSPXPXSXXXPS 777
P P P P P PP R + P P P+P P + PS
Sbjct: 4 PPPPRRAPPPPATPPPPPRRAPPPPSPPIRPPPPPTPRPYAPPPPS 49
>02_04_0658 - 24793219-24794109
Length = 296
Score = 29.1 bits (62), Expect = 4.6
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 5 FFFFLLSQLVALLFKCAFYNITSQEHGTSIRGSW 106
FF LL+ LV + C ++ I QE+ I G W
Sbjct: 252 FFILLLALLVFISIVCPYWLIRIQEYKFEINGPW 285
>12_02_1174 - 26696869-26698191
Length = 440
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/51 (29%), Positives = 16/51 (31%)
Frame = +1
Query: 622 PXXXXPEXPXPXXGXPXXPXXPXXPPXRXXXLAAXXPXPXPSPXPXSXXXP 774
P P P P P P PP + P P PS P S P
Sbjct: 143 PVKPQPPPSLPPPPPPPPPPPPPRPPSVKPPVVQPKPQPPPSLQPPSPPPP 193
>12_02_0299 - 17051570-17052474,17053542-17053755
Length = 372
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/51 (31%), Positives = 17/51 (33%)
Frame = +1
Query: 622 PXXXXPEXPXPXXGXPXXPXXPXXPPXRXXXLAAXXPXPXPSPXPXSXXXP 774
P P P P P P P PP + P P P P P S P
Sbjct: 290 PPPPPPAFPFPF---PQLPPLPHFPPLPSFYPSPPPPPPPPPPPPPSFPWP 337
>10_06_0039 -
9966744-9967535,9968241-9968482,9969021-9969223,
9969333-9970645
Length = 849
Score = 28.7 bits (61), Expect = 6.0
Identities = 12/35 (34%), Positives = 12/35 (34%)
Frame = +1
Query: 652 PXXGXPXXPXXPXXPPXRXXXLAAXXPXPXPSPXP 756
P P P P PP R P P P P P
Sbjct: 323 PPSNPPPAPPPPPPPPSRFNNTTPKPPPPPPPPEP 357
>07_03_0890 - 22332768-22333382
Length = 204
Score = 28.3 bits (60), Expect = 8.0
Identities = 15/43 (34%), Positives = 16/43 (37%)
Frame = +1
Query: 646 PXPXXGXPXXPXXPXXPPXRXXXLAAXXPXPXPSPXPXSXXXP 774
P P P P P PP R AA P P P P + P
Sbjct: 77 PPPAEATPPPPPPPP-PPERAVPEAADTPPPPPPPTAPTPTPP 118
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,780,037
Number of Sequences: 37544
Number of extensions: 134478
Number of successful extensions: 631
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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