Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_H12
         (797 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    24   1.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.3  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   5.7  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   5.7  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   7.6  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 8/39 (20%), Positives = 19/39 (48%)
 Frame = +2

Query: 446 HTEEANREHLSSTHKHALHRKNLHPPAEPEHRRIARHER 562
           H  +A ++HL +  +H ++++     A  +  +   H R
Sbjct: 186 HQSQAQQQHLQAHEQHMMYQQQQQSQAASQQSQPGMHPR 224


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 2/77 (2%)
 Frame = +2

Query: 338 SQDILPPCKLLTATNLTSHHANYNFTGSTSLTRCYSHTEEANREHLSSTHKH--ALHRKN 511
           S   LP     T T  T+  A    T +T+ T            HL + H H  +   ++
Sbjct: 99  SSTSLPATITTTTTTTTTTTATAAATATTTATGLIKQETLQRHHHLQNHHHHLQSTAVQD 158

Query: 512 LHPPAEPEHRRIARHER 562
            H P + + ++  R ++
Sbjct: 159 HHRPYQQQQQQQQRQQQ 175


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = +3

Query: 468 NTCQARTSTHFTGKTCIRQRNPNTAASPDTNAPDVLSYRSRRLQNVSIFLPRGN 629
           N+C      +F G       NPNT  S D    ++   +  RL++     P GN
Sbjct: 97  NSCYQERYEYFPGFPGEEMWNPNTNISEDCLYLNIWVPQKYRLRHKGDGSPGGN 150


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = +3

Query: 468 NTCQARTSTHFTGKTCIRQRNPNTAASPDTNAPDVLSYRSRRLQNVSIFLPRGN 629
           N+C      +F G       NPNT  S D    ++   +  RL++     P GN
Sbjct: 97  NSCYQERYEYFPGFPGEEMWNPNTNISEDCLYLNIWVPQKYRLRHKGDGSPGGN 150


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +1

Query: 4   FFFFLRLHSDLEW 42
           F+FF+ + S+L W
Sbjct: 86  FYFFMSMRSELPW 98


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,256
Number of Sequences: 438
Number of extensions: 4863
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)