Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_T7_H11
(805 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 32 0.11
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa... 30 0.44
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo... 29 1.0
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 23 3.0
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch... 27 3.1
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 27 3.1
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 27 3.1
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 4.1
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M... 27 4.1
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 26 5.5
SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit L9|S... 25 9.5
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 25 9.5
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 25 9.5
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 31.9 bits (69), Expect = 0.11
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +3
Query: 384 PATTQTTILRVPPLLHDVTPTLRTPTANTCQARTSTHFTGKTCIRQRNPNTAASP-DTNA 560
P T+ T + PP+ TP ++ TST T T + P T+++ +T+
Sbjct: 1643 PITSSTALNTSPPITSSTVVNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTST 1702
Query: 561 P 563
P
Sbjct: 1703 P 1703
>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 639
Score = 29.9 bits (64), Expect = 0.44
Identities = 22/70 (31%), Positives = 32/70 (45%)
Frame = +2
Query: 374 TNLTSHHANYNFTGSTSLTRRYSHTEDANREHLSSTHKHALHRKNLHPPAEPEHRRIARH 553
TN TS H T+ +RR+ H +RE KH H ++ P + R +RH
Sbjct: 7 TNRTSTHKFNETDRETNHSRRHRHHHSRHRE-----SKHGRHDRSERPSSREAGDR-SRH 60
Query: 554 ERTGRLILQV 583
ER + L+V
Sbjct: 61 ERFSKEPLEV 70
>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
Pik3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 801
Score = 28.7 bits (61), Expect = 1.0
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 506 NLHPPAEPEHRRIARHERTGRL 571
NL PAE +HRR+ R +R G L
Sbjct: 235 NLDSPAELKHRRLVRSQRNGPL 256
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 23.0 bits (47), Expect(2) = 3.0
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +2
Query: 176 RGAPISAVRAGGVISSFGGPVGRPPLPSRRSARFS 280
R P + V GG S P+ RPPLPS S+ S
Sbjct: 154 RPLPETPVSPGG---SLVHPLPRPPLPSSVSSHSS 185
Score = 22.2 bits (45), Expect(2) = 3.0
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 374 TNLTSHHANYNFTGSTSLTRRYS 442
++++SH + Y+ T STSL Y+
Sbjct: 178 SSVSSHSSPYSTTSSTSLYSLYN 200
>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -2
Query: 651 KQANKKASKFPWGRKIDTSEVVVTCKIRRPVRS 553
K N+ + +FP+ KI TCK +P RS
Sbjct: 139 KNWNEASRRFPYDYKIFFPNKCSTCKFEKPARS 171
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 27.1 bits (57), Expect = 3.1
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +2
Query: 416 STSLTRRYSHTEDANREHLSSTHKHALHRKNLHPPAEPEHRRIARHER 559
STS R+ E +E S H+H HR++ EP ++RH R
Sbjct: 128 STSPANRHRRKE---KERTRSNHRHGSHRRH-----EPYRTHLSRHHR 167
>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 308
Score = 27.1 bits (57), Expect = 3.1
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +2
Query: 374 TNLTSHHANYNFTGSTSLTRRYSHTEDAN 460
++ S H N N +++R+YS+T+D N
Sbjct: 83 SSFLSDHNNNNLFSDDTISRQYSNTDDIN 111
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.6 bits (56), Expect = 4.1
Identities = 27/121 (22%), Positives = 55/121 (45%), Gaps = 5/121 (4%)
Frame = +2
Query: 257 SRRSARFSRTGWAATAEVSRPATCADSQDILPPCKLLTATNLTSHHANYNFTGSTS-LTR 433
S+ S+ FS T ++++ S T + S P +++L+SH ++ + S++ ++
Sbjct: 362 SKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSSSSKSSSAPVSS 421
Query: 434 RYSHTEDANR--EHLSSTHKHALHRKNLHPPAEPEHRRIARH--ERTGRLILQVTTTSDV 601
+ H ++R H SS +L K + + + H ER+ ++ V T S
Sbjct: 422 AFYHNSTSSRSSSHSSSHSLSSLSSKPILTASSSSLLTSSSHTYERSTVYVVTVETVSSG 481
Query: 602 S 604
S
Sbjct: 482 S 482
>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 685
Score = 26.6 bits (56), Expect = 4.1
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 232 TRRPASVTVEAICPVLADWVGRDRGSLTSGYLCR 333
TR+ + + ++A+CPVL + VG LT L R
Sbjct: 362 TRKLSEIVLDALCPVLPELVG-GSADLTPSNLTR 394
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 26.2 bits (55), Expect = 5.5
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +1
Query: 352 TMQTSYRNKSYQPPRKLQFYGFHLSYTTLLPH*GRQPRTLVKHAQART 495
TM + ++K RKL+ HL + +L+ H QP +HAQ RT
Sbjct: 1356 TMLKTSQSKDSSSLRKLRATCLHLLFASLVAHKFDQP----QHAQTRT 1399
>SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +3
Query: 339 KTFYHHANFLPQQIL 383
+TF HHAN P++IL
Sbjct: 13 RTFAHHANLTPRKIL 27
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.4 bits (53), Expect = 9.5
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Frame = +3
Query: 354 HANFLPQQILPATTQTTILRVPPLLHDVTPTLRTPT--ANT 470
H N + P T T VPP H T T+ PT ANT
Sbjct: 114 HVNSTTTVVPPTTHVNTTTVVPPTTHVNTTTVVPPTTHANT 154
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1811
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 506 NLHPPAEPEHRRIARHERTGRLILQVTTTSD 598
+L PP + R E+TG L Q T+TS+
Sbjct: 77 SLRPPEDDLDSRSIESEQTGTLSKQTTSTSE 107
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,092,325
Number of Sequences: 5004
Number of extensions: 62081
Number of successful extensions: 220
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -