Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_H07
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc...    30   0.41 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   1.7  
SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein S10|Schizosa...    27   2.2  
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe...    26   6.7  
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch...    25   8.8  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    25   8.8  
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote...    25   8.8  

>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
            Prp22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1168

 Score = 29.9 bits (64), Expect = 0.41
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +1

Query: 442  RTRHPTAPTGDERELRARAAHSAFFAVKPKRD 537
            R RHP    G +REL  RA  S +F    KRD
Sbjct: 1034 RYRHPVVSCGRKRELILRALCSGYFTNVAKRD 1065


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
 Frame = +1

Query: 388 EPPCAASPPDQQPSTGHPRTRHPTAPTGDERELRARAA---HSAFFAVKPKRDP--TPFR 552
           +PP AA+P    PS  +P    P  P  +++   A      +S+  AV P+  P  TP +
Sbjct: 172 QPPSAAAPATSLPSDYNPPPPPPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPTYTPKQ 231

Query: 553 A-PQPHGTP*P 582
           A P P   P P
Sbjct: 232 ADPLPAPPPPP 242


>SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 144

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +1

Query: 409 PPDQQPSTGHPRTRHPTAPTGDERELRARAAHSAFFAVKPKRD 537
           P +  P+T H R   PTAP     E R RA+  A +    K+D
Sbjct: 83  PAEVVPAT-HKRQVRPTAPRAGRPEPRERASADAGYRRAEKKD 124


>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 565

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -3

Query: 424 AVGPVVRRRKVA-PVHRSRCVSETTSCGIFPGMECRPIN 311
           A   V+  RK+A P  R R  S  +S GIF  +  +P++
Sbjct: 31  ASADVMATRKIAKPKSRKRPTSGVSSPGIFANLAAKPVS 69


>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 487

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 256 VSWSRSGGARWGLVGSRSAGQ 194
           ++W+   G RW L GS  +G+
Sbjct: 283 INWTIREGERWALTGSNGSGK 303


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
 Frame = +3

Query: 204 ERLPTK--PHRAPPLRLHETH--GYRTVRAEGSPSPVPILLIGRHSIPGKIPQDVVSETH 371
           ++LPT   P + PP+    +    Y+        +P+P+  +G   +P + P  V  +  
Sbjct: 424 QKLPTSSPPSQHPPVGQIPSQYLPYQAGLKVPGNTPIPVKQVG--GMPLQSPLPVSMKPS 481

Query: 372 RERCTGATLRRLTTGPTAEYRAPPHP 449
            +  + AT  R    PT    AP HP
Sbjct: 482 ADDHSRATPTRSVEAPTLPSYAPRHP 507


>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
           kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 384 TGATLRRLTTGPTAEYRAPPHP 449
           TG TLRR ++G TA  R   HP
Sbjct: 55  TGDTLRRQSSGATALERLVSHP 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,928,744
Number of Sequences: 5004
Number of extensions: 61602
Number of successful extensions: 184
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)