Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_H07
         (756 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   1.0  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   1.8  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    23   3.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.4  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    22   7.1  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    22   7.1  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 142 SPNFSQETTPXKKAREALAPQ 204
           SPN ++ETTP K+ + A   Q
Sbjct: 782 SPNSTKETTPKKERKTATTTQ 802


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 383 HRSHLAPPHHRTNSRVPGTPAPGTRQ 460
           H SH A PHH+ ++ +  +  P   Q
Sbjct: 433 HHSHAATPHHQHSTPLAHSSYPAAIQ 458


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 13/54 (24%), Positives = 18/54 (33%)
 Frame = +2

Query: 305 HPVNRTALHPRENPAGRRLGDTP*AVHRSHLAPPHHRTNSRVPGTPAPGTRQPL 466
           HP  R    P+  P   R       ++     PPH R          PG  +P+
Sbjct: 57  HPRLRREAEPKAEPGNNR------PIYIPQPRPPHPRLRREAESEAEPGNNRPV 104


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -3

Query: 673 VLGRDLSLRAVIARMXE-DXDSWEAMTRFCDLVM 575
           VL RD+ +RAV+A+  + D +     +R C  V+
Sbjct: 117 VLSRDVQVRAVVAQAYKVDVEVIGGASRGCTAVL 150


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -3

Query: 673 VLGRDLSLRAVIARMXE-DXDSWEAMTRFCDLVM 575
           VL RD+ +RAV+A+  + D +     +R C  V+
Sbjct: 117 VLSRDVQVRAVVAQAYKVDVEVIGGASRGCTAVL 150


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 14/43 (32%), Positives = 17/43 (39%)
 Frame = +2

Query: 305 HPVNRTALHPRENPAGRRLGDTP*AVHRSHLAPPHHRTNSRVP 433
           +P+     HP   P G          H SHL  P  R NS+ P
Sbjct: 17  YPMVVHVYHPYRQPDGMNQCQAVNG-HCSHLCLPAPRINSKSP 58


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 14/43 (32%), Positives = 17/43 (39%)
 Frame = +2

Query: 305 HPVNRTALHPRENPAGRRLGDTP*AVHRSHLAPPHHRTNSRVP 433
           +P+     HP   P G          H SHL  P  R NS+ P
Sbjct: 17  YPMVVHVYHPYRQPDGMNQCQAVNG-HCSHLCLPAPRINSKSP 58


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,238
Number of Sequences: 438
Number of extensions: 5716
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)