Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_H03
         (782 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.60 
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    24   1.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.6  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    21   9.8  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.4 bits (53), Expect = 0.60
 Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 2/85 (2%)
 Frame = +1

Query: 313 SRPATCADSQDILPPCKLLTATNLTSHHANYNFTGSTSLTRRYSHTEEANREHLSSTHKH 492
           SRP     S   LP     T T  T+  A    T +T+ T            HL + H H
Sbjct: 91  SRPLHPPASSTSLPATITTTTTTTTTTTATAAATATTTATGLIKQETLQRHHHLQNHHHH 150

Query: 493 --ALHRKNLHPPAEPEHRRIARHER 561
             +   ++ H P + + ++  R ++
Sbjct: 151 LQSTAVQDHHRPYQQQQQQQQRQQQ 175


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 8/39 (20%), Positives = 19/39 (48%)
 Frame = +1

Query: 445 HTEEANREHLSSTHKHALHRKNLHPPAEPEHRRIARHER 561
           H  +A ++HL +  +H ++++     A  +  +   H R
Sbjct: 186 HQSQAQQQHLQAHEQHMMYQQQQQSQAASQQSQPGMHPR 224


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = +1

Query: 499  HRKNLHPPAEPEHRRIARHERTGRLILQVTTTSDVSIFLP 618
            H + LH P +     ++R    G+  ++V   SD   F+P
Sbjct: 1482 HNEKLHIPKDKSVSVLSRENEAGQKEVKVLLGSDKIKFVP 1521


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -1

Query: 239 TGPPNDEITPPARTADIGAPRSGCTC 162
           T P   EI P  +T D G P +  TC
Sbjct: 305 TAPLGAEIEPSTQTIDFGRPAT-FTC 329


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -3

Query: 414 RKIVVCVVAGKICCGK 367
           +K+  C + GK+ C K
Sbjct: 3   KKLFTCQLCGKVLCSK 18


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,786
Number of Sequences: 438
Number of extensions: 4644
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)