Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_G24
         (824 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.09 |cdb4||curved DNA-binding protein Cdb4|Schizosacchar...    29   1.1  
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    27   4.3  
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    27   4.3  
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt...    26   7.5  
SPAC12B10.15c |||ribonuclease H2 complex subunit|Schizosaccharom...    26   7.5  
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    25   9.9  
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi...    25   9.9  
SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces...    25   9.9  

>SPAC23H4.09 |cdb4||curved DNA-binding protein
           Cdb4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 24/83 (28%), Positives = 38/83 (45%)
 Frame = -3

Query: 729 TGKARPIDPLV*RVLARGARKVPPGITGLWQPSVHSDVAF*SFDVGSSYHCEANSPSVGL 550
           TG A  +       L    R + PG T  WQ +   D       + +SY C+   P  G+
Sbjct: 138 TGPAADVIAAASAALKAAQRTIKPGNTN-WQVTDIVD------KIATSYGCK---PVAGM 187

Query: 549 FTHQKERELGLDRRETG*FYPTD 481
            +HQ+ERE+ +D ++     P+D
Sbjct: 188 LSHQQEREV-IDGKKQVILNPSD 209


>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 25/115 (21%), Positives = 48/115 (41%)
 Frame = -1

Query: 398 AGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHPKRETRRRS 219
           A  A+  +A     A +AEA   E+ K+++  EP+++  +K+       +      R   
Sbjct: 89  AAEAEAAAAARAAAAKEAEAKRLEAAKNIVLKEPKDAPAAKKIAIIDSTNFRDSRVRVNG 148

Query: 218 PFGSRRSMLSVFFLTRASRLRRSGYNSVRCRGSE*SVDDFRSWRGVVLGRAASCC 54
                R+   + F+     + R G   ++C  S   V D  S+  + LG  ++ C
Sbjct: 149 WVHRMRTQKGIIFI-----ILRDGTGFLQCVLSG-KVYDRASYDFINLGPESTVC 197


>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 634 WLPQASYPWWYFSGTSC 684
           WL Q    WWY  G++C
Sbjct: 467 WLTQLQESWWYRVGSAC 483


>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
           subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +1

Query: 61  DAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSR 240
           D  +PS  P    +SS+  S  RH  +   +L S     +   D   LRD +  + RVS+
Sbjct: 119 DNLIPSPLPESASRSSSQSSHQRHSRDGRGELGSEHGERRSAMDG--LRDRHIRKVRVSQ 176


>SPAC12B10.15c |||ribonuclease H2 complex
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +3

Query: 450 LSSITIATTSHQ*GKTNLSHDGLIPAHVPFDG 545
           + S+       Q G +NL    L+P H+ +DG
Sbjct: 1   MDSVKPIVKLEQAGSSNLEKASLLPCHISYDG 32


>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = -1

Query: 470 CDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNA--SKAEASLAESG 321
           CD+       + S G L H + R  GG  +  + +  N+  SK E  +A SG
Sbjct: 601 CDACLNLGTHSESIGDLEHQIRRYTGGISISPSAVTNNSDVSKYELGIAISG 652


>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 680

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -3

Query: 267 LY*SRFASKTR-DATSKPIWIAEIDAIGFFLNTCI 166
           LY  +F    R  ATS  I + EID  G+F N+ +
Sbjct: 467 LYYKKFVEAIRASATSMAIALEEIDEYGYFHNSFV 501


>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 312

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 110 VDDFRSWRGVVLGRAASCCDLLRLS 36
           VD FR W  +      SC DLL+LS
Sbjct: 72  VDGFRLWITMEYCDGGSCLDLLKLS 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,245,751
Number of Sequences: 5004
Number of extensions: 65714
Number of successful extensions: 168
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)