Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_G24
         (824 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315...    33   0.36 
07_03_1140 - 24258627-24258849,24259967-24260089,24260200-242609...    31   0.84 
03_02_0034 - 5166987-5167010,5167596-5167659,5168071-5168174,516...    30   2.6  
05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581     29   3.4  
01_06_0695 - 31292622-31293317                                         29   4.5  
07_03_1086 + 23858419-23859423,23859527-23859610                       29   5.9  
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373...    29   5.9  
03_05_0183 - 21681673-21682524                                         28   7.8  

>02_04_0232 +
           21130122-21130454,21130895-21131053,21131424-21131582,
           21132420-21132512,21133321-21133437,21133623-21133697,
           21133878-21134104,21134200-21135073
          Length = 678

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = +1

Query: 73  PSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSID 201
           PS TP  ER  S+D   PR     Y   R+RD    K+  S D
Sbjct: 365 PSDTPHLERSQSSDRRRPRSSDPRYTPSRTRDEDAHKQHSSRD 407


>07_03_1140 -
           24258627-24258849,24259967-24260089,24260200-24260921,
           24260945-24261073,24261484-24261714
          Length = 475

 Score = 31.5 bits (68), Expect = 0.84
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 638 CHKPVIPGGTFLAPLAKTL 694
           C KP+IP GT +APL K +
Sbjct: 307 CRKPIIPSGTMVAPLVKKI 325


>03_02_0034 -
           5166987-5167010,5167596-5167659,5168071-5168174,
           5168685-5168829,5168914-5169055,5169432-5169751,
           5169895-5170196,5170603-5170647,5171218-5171268,
           5171374-5171460,5171587-5171764,5172453-5172528,
           5173018-5173234,5173604-5173909
          Length = 686

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 23/76 (30%), Positives = 34/76 (44%)
 Frame = +1

Query: 67  ALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFG 246
           A+PS   R+ R S T  S     T +   +RS +A V+ K    D+      +RR  + G
Sbjct: 438 AIPSPELRRVRTSFTGASSWVATTAMGKVVRSANAPVEPKAKVEDVEK----QRRRGKGG 493

Query: 247 CETRLVKSHCLEPPDS 294
           C   +  + C  PP S
Sbjct: 494 CNGTVSSARCRSPPPS 509


>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
          Length = 311

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -1

Query: 428 GHLVHALGR-AAGGAKLPSAGLCLNASKAEASLA 330
           G LV  L R   GG    SAG+C   S+ +ASLA
Sbjct: 203 GRLVETLARDGGGGGGAYSAGVCFYGSRMDASLA 236


>01_06_0695 - 31292622-31293317
          Length = 231

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 16/47 (34%), Positives = 19/47 (40%)
 Frame = +1

Query: 19  LSPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLR 159
           + P     L   Q D   PS++      SST  S P HR  L P  R
Sbjct: 1   MEPSTKQLLPMPQQDPNSPSSSTSSSSSSSTSPSHPHHRAPLPPSPR 47


>07_03_1086 + 23858419-23859423,23859527-23859610
          Length = 362

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
 Frame = -1

Query: 488 LLMACRCDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNA-----SKAEASLAES 324
           LL    CD N A      +   LVHAL  AA  A   +A   L         A AS+  +
Sbjct: 129 LLNLSICDENKAIIVEAGAIRPLVHALKSAASPAARENAACALLRLSQLDGSAAASIGRA 188

Query: 323 GKDMLTVEPRESGGSK 276
           G   L V   E+GG++
Sbjct: 189 GAIPLLVSLLETGGAR 204


>06_03_1055 -
           27234824-27234838,27236087-27236125,27236322-27237388,
           27237422-27237630,27237650-27238053
          Length = 577

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = -1

Query: 341 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHPKRETRRRSPFGS 207
           A+ A +GK +   E  E   S+QCD T  + +  RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473


>03_05_0183 - 21681673-21682524
          Length = 283

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -1

Query: 638 SQAFIATLLFDPSMSALPIIAKQIRQA 558
           SQAF A LL D + +A+P++  Q R A
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQKRPA 255


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,872,595
Number of Sequences: 37544
Number of extensions: 504391
Number of successful extensions: 1429
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1427
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)