Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_G24
         (824 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022978-7|AAG24177.2|  403|Caenorhabditis elegans Nuclear hormo...    30   2.3  
AF003141-13|AAK21490.1|  549|Caenorhabditis elegans Hypothetical...    30   2.3  
Z70680-3|CAA94575.1| 1263|Caenorhabditis elegans Hypothetical pr...    29   3.1  
U43562-1|AAC47411.1| 1263|Caenorhabditis elegans DPY-26 protein.       29   3.1  

>AF022978-7|AAG24177.2|  403|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 131 protein.
          Length = 403

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
 Frame = +1

Query: 34  GLSLNRSQHDA-ALPSTTPRQERK----SSTDYSEPRHRTELYPDLRSRDARVKKKTDSI 198
           G+ +++ QHD  AL    P ++RK    +   +SEP      +P  R  D ++KKK   +
Sbjct: 71  GMDVSKFQHDRDALQIVHPNRKRKLAQLADPIFSEPNF-VFFFPQDRE-DLKLKKKNTYV 128

Query: 199 DLRDPNGLRRRVSRFGCETRLVKSHCLE 282
           DL         + + G ET LV  + L+
Sbjct: 129 DLSLLVSQAMEIIKTGPETPLVAKNQLQ 156


>AF003141-13|AAK21490.1|  549|Caenorhabditis elegans Hypothetical
           protein W02D3.11a protein.
          Length = 549

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 11/88 (12%)
 Frame = +1

Query: 28  GAGLSLNRSQHDAALPSTTPRQERKSSTDYSE--PRHRTELY-----PDLRS----RDAR 174
           G   S +     AA  S+ P Q++ S+  Y    P+   E Y     PD R     RD+R
Sbjct: 272 GVRASYDPYTQPAAPVSSYPSQQQPSAGYYDNYAPKTAYESYGRERGPDPRDVRDPRDSR 331

Query: 175 VKKKTDSIDLRDPNGLRRRVSRFGCETR 258
           +    DS  L DP     R S +G E+R
Sbjct: 332 MPDPRDSRALSDPYAAESRYSEYGYESR 359


>Z70680-3|CAA94575.1| 1263|Caenorhabditis elegans Hypothetical protein
            C25G4.5 protein.
          Length = 1263

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 22/74 (29%), Positives = 29/74 (39%)
 Frame = +1

Query: 88   RQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFGCETRLVK 267
            R   KS+ D +E        PD ++ D R   +  +      N   R+V   GC T L  
Sbjct: 1076 RSPNKSNHDVNETMKALTEMPDYQAADERPNNQPTTSTYGTANTENRKVHINGCHTLL-- 1133

Query: 268  SHCLEPPDSRGSTV 309
            S  L  P   G TV
Sbjct: 1134 SLALSMPSRMGETV 1147


>U43562-1|AAC47411.1| 1263|Caenorhabditis elegans DPY-26 protein.
          Length = 1263

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 22/74 (29%), Positives = 29/74 (39%)
 Frame = +1

Query: 88   RQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFGCETRLVK 267
            R   KS+ D +E        PD ++ D R   +  +      N   R+V   GC T L  
Sbjct: 1076 RSPNKSNHDVNETMKALTEMPDYQAADERPNNQPTTSTYGTANTENRKVHINGCHTLL-- 1133

Query: 268  SHCLEPPDSRGSTV 309
            S  L  P   G TV
Sbjct: 1134 SLALSMPSRMGETV 1147


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,383,846
Number of Sequences: 27780
Number of extensions: 389121
Number of successful extensions: 1067
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1067
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)