Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_G23
         (857 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    35   0.013
SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po...    29   0.84 
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    26   6.0  
SPCC622.14 |||GTPase activating protein |Schizosaccharomyces pom...    26   6.0  

>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 475

 Score = 35.1 bits (77), Expect = 0.013
 Identities = 33/130 (25%), Positives = 55/130 (42%)
 Frame = +2

Query: 158 TLTPDVRSPPRSEPG*GRGATAVNTTTRRRGSPQGRPADGAFEANRRL*NVGRLGTAARR 337
           T+TP+    P S     + + + N  +RR G+ + R    +  +N+R  N  R   A+R 
Sbjct: 149 TITPNFTHTPISNR---KSSRSRNDGSRRNGNGRRRGNYSSHGSNKRQTNYSREKDASRS 205

Query: 338 AAQTVPLVSRNTPLDQNQPAGSGRDTPSTGRSNHSTAAR*SAGSAPHGLTPSGRPLTFTG 517
              + P        D N   GS   + + G+    T+   S+  APH  + SG   +  G
Sbjct: 206 IDSSNPSAEYRD--DINNTFGSQTVSSANGKEVPQTSED-SSSQAPHHSSSSGHAPSQQG 262

Query: 518 GEAATYRGRD 547
           G   +Y+  D
Sbjct: 263 GNKHSYKKSD 272


>SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = +2

Query: 395 AGSGRDTPSTGRSNHSTAAR*SAGSAPHGLTPSG---RPLTFTGGEAATYRGRDV 550
           A S R TP+  RS  STA R    +   G   +G    P T +  ++ + RG+ V
Sbjct: 142 ASSARQTPAPSRSGASTAGRRRTSATTRGAIQNGVYHSPYTASLADSGSTRGQKV 196


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 963

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +2

Query: 395  AGSGRDTPSTGRSNHSTAAR*SAGSA-PHGLTPSGRPLTFTGGEAAT 532
            +G GR  P     N  +    SA +A P+GL P   PLT    +  T
Sbjct: 862  SGMGRAAPGMFMGNVGSFENLSANAASPYGLPPQQTPLTNAATQQTT 908


>SPCC622.14 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -1

Query: 422 STVYRVPTRQAGSGPAGYSGTPAAPSGRPDGLPYRDGRRFRAFDS 288
           STV  +P+    +    ++   +  S RPD LP   G R++ F S
Sbjct: 138 STVPTIPSVSKEANDKYFAKLGSINSQRPDDLPPSQGGRYQGFGS 182


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,761,658
Number of Sequences: 5004
Number of extensions: 52478
Number of successful extensions: 141
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)