Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_T7_G17
(885 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_1037 - 22477358-22478752 33 0.23
03_01_0515 - 3864796-3865425 32 0.53
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 32 0.70
12_02_1174 - 26696869-26698191 30 2.1
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 30 2.8
06_01_0178 + 1386981-1387505 29 5.0
12_02_0306 + 17307166-17309091 28 8.7
05_01_0351 + 2750253-2751042,2751951-2751958,2752122-2752149,275... 28 8.7
04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078 28 8.7
>10_08_1037 - 22477358-22478752
Length = 464
Score = 33.5 bits (73), Expect = 0.23
Identities = 15/55 (27%), Positives = 21/55 (38%)
Frame = +1
Query: 574 VPPRHPXAPSXCLXXRAXRSPPRXFPXXXPPPLXSXXXPRGXXXXXXHXPLAPPP 738
+PP+H + + R PP P PPP+ + P H P P P
Sbjct: 255 LPPQHQQPKPPSMRLQKIRPPPISTPVARPPPVHNHQIPNPNHNPAFHRPPPPQP 309
>03_01_0515 - 3864796-3865425
Length = 209
Score = 32.3 bits (70), Expect = 0.53
Identities = 30/110 (27%), Positives = 33/110 (30%), Gaps = 1/110 (0%)
Frame = +1
Query: 412 VXAXAXAXXXITXXXXPALPXXXXPXXPXARI-PRPXXXPXXXXXIXXPXXAXXLVPPRH 588
V A A A T P+ P P P P P P A L+PP
Sbjct: 15 VVAIANADDYTTAAPAPSPEAEASPPSPPTEASPPPLAPPPSVTSSPPPPAAGPLMPPP- 73
Query: 589 PXAPSXCLXXRAXRSPPRXFPXXXPPPLXSXXXPRGXXXXXXHXPLAPPP 738
P PS PP P PPP S P +PPP
Sbjct: 74 PPPPSV-----TSSPPPPPLPPPPPPPAASPPPPPPSPPPPSPVKSSPPP 118
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 31.9 bits (69), Expect = 0.70
Identities = 28/101 (27%), Positives = 31/101 (30%), Gaps = 8/101 (7%)
Frame = +1
Query: 460 PALPXXXXPXXPXARIPRPXXXPXXXXXIXXPXXAXXLVPPRHPXAPSXCLXXRAXRSPP 639
P P P P +P P P P ++PP P P L R PP
Sbjct: 602 PPPPPPPPPILPNRSVPPPPPPPP-------PLPNHSVLPPPPPPPPPPSLPNRLVPPPP 654
Query: 640 -----RXFPXXXPP---PLXSXXXPRGXXXXXXHXPLAPPP 738
FP PP P S P G P PPP
Sbjct: 655 APGIGNKFPAPPPPPPPPRSSSRTPTGAATSSKGPPPPPPP 695
>12_02_1174 - 26696869-26698191
Length = 440
Score = 30.3 bits (65), Expect = 2.1
Identities = 26/93 (27%), Positives = 28/93 (30%)
Frame = +1
Query: 460 PALPXXXXPXXPXARIPRPXXXPXXXXXIXXPXXAXXLVPPRHPXAPSXCLXXRAXRSPP 639
P LP P P PR P + P PPR P L + SPP
Sbjct: 214 PTLPPPSPPPPPPTVPPRT---PGDTPAVVEPKPQPPPPPPRAPVKMPRVLEPKP--SPP 268
Query: 640 RXFPXXXPPPLXSXXXPRGXXXXXXHXPLAPPP 738
P PPP P P PPP
Sbjct: 269 P--PSPLPPPPEDYWSPTAVTPPEPTKPKPPPP 299
>11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 29.9 bits (64), Expect = 2.8
Identities = 19/53 (35%), Positives = 20/53 (37%)
Frame = +1
Query: 580 PRHPXAPSXCLXXRAXRSPPRXFPXXXPPPLXSXXXPRGXXXXXXHXPLAPPP 738
PR P APS + SPP P PPP P G P PPP
Sbjct: 902 PRPPPAPSATANTASALSPPPPRPPGAPPPPPPPGKPGGP------PPPPPPP 948
>06_01_0178 + 1386981-1387505
Length = 174
Score = 29.1 bits (62), Expect = 5.0
Identities = 24/93 (25%), Positives = 27/93 (29%)
Frame = -2
Query: 737 GGGARGXCXXXXXXPRGXXXDXXGGGXXXGXXRGGERXARXXRXXEGAXGCRGGTRXXAX 558
G G RG G GGG +GG+ A G G GG
Sbjct: 25 GRGGRGGRGGASGGGGGGGGGGGGGGGGGAGGKGGKGGAGGHGGAGGGGGGGGGKGRKGG 84
Query: 557 XGXXXXSXXXGXXXGRGIRASGXXGXXXXGRAG 459
G + G G R G G G AG
Sbjct: 85 AGGHGGAGGGGGGGGGKGRKGGRGGDGGSGGAG 117
>12_02_0306 + 17307166-17309091
Length = 641
Score = 28.3 bits (60), Expect = 8.7
Identities = 17/51 (33%), Positives = 17/51 (33%)
Frame = -2
Query: 737 GGGARGXCXXXXXXPRGXXXDXXGGGXXXGXXRGGERXARXXRXXEGAXGC 585
GGGARG G GGG G G AR G GC
Sbjct: 543 GGGARGGAPGGVGSGGGVALTGGGGGIVCGGGGSGGGGARGGFLLGGVAGC 593
>05_01_0351 +
2750253-2751042,2751951-2751958,2752122-2752149,
2754692-2754775,2755780-2757548
Length = 892
Score = 28.3 bits (60), Expect = 8.7
Identities = 17/56 (30%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Frame = +1
Query: 577 PPRHPXAPSXCLXXRAXRSPPRXFPXXXPPPL--XSXXXPRGXXXXXXHXPLAPPP 738
P +HP + PP P PPPL PR PL PPP
Sbjct: 715 PAQHPHLQPPARPAQQPPRPPVTQPLPPPPPLHQHQPYQPRHTDALPLPLPLPPPP 770
>04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078
Length = 1034
Score = 28.3 bits (60), Expect = 8.7
Identities = 21/70 (30%), Positives = 21/70 (30%)
Frame = -2
Query: 668 GGGXXXGXXRGGERXARXXRXXEGAXGCRGGTRXXAXXGXXXXSXXXGXXXGRGIRASGX 489
GGG G RGG R G G GG G G GRG G
Sbjct: 7 GGGRGRGRGRGGGRGGGGGDGRGGGYGGAGG----GGVGGRGGRGPPGGGGGRGYEPGGG 62
Query: 488 XGXXXXGRAG 459
G G G
Sbjct: 63 RGYGGGGGGG 72
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,704,035
Number of Sequences: 37544
Number of extensions: 133705
Number of successful extensions: 512
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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